Variant report

Variant	rs9343138
Chromosome Location	chr6:75044928-75044929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1038684	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10485385	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10485386	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10485387	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10805997	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12175094	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12524014	0.82[EUR][1000 genomes]
rs12525068	0.82[EUR][1000 genomes]
rs12528947	0.89[EUR][1000 genomes]
rs1387418	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1387419	0.82[EUR][1000 genomes]
rs1387420	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1416395	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1416396	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1416397	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1416398	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1489380	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1552564	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1552565	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16884558	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16884590	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1844317	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1953176	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2029393	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2029394	0.81[EUR][1000 genomes]
rs2068742	0.81[EUR][1000 genomes]
rs2200809	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34261519	0.81[EUR][1000 genomes]
rs4120421	0.84[EUR][1000 genomes]
rs4706577	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4706578	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4708141	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4708142	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60997457	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67514214	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6907419	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72950553	0.84[EUR][1000 genomes]
rs72953713	0.84[EUR][1000 genomes]
rs72953738	0.81[EUR][1000 genomes]
rs72953745	0.82[EUR][1000 genomes]
rs72954310	0.81[EUR][1000 genomes]
rs72959610	0.88[EUR][1000 genomes]
rs72959903	0.82[EUR][1000 genomes]
rs72964264	0.81[EUR][1000 genomes]
rs72964267	0.81[EUR][1000 genomes]
rs72967270	0.88[EUR][1000 genomes]
rs73460274	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7746000	0.81[EUR][1000 genomes]
rs7752957	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7776197	0.81[EUR][1000 genomes]
rs9293958	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9293959	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9293960	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9293962	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9293964	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9341460	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9341461	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9343123	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9343127	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9343128	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9352083	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9352084	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9352085	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9352087	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9359076	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360757	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360759	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360761	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360763	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360766	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360769	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360770	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75043000-75045600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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