Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10455104	0.84[EUR][1000 genomes]
rs10943383	0.96[EUR][1000 genomes]
rs1156081	0.84[EUR][1000 genomes]
rs1156082	0.84[EUR][1000 genomes]
rs11758917	0.84[EUR][1000 genomes]
rs12203866	0.92[EUR][1000 genomes]
rs12204639	0.98[EUR][1000 genomes]
rs12206594	0.83[ASN][1000 genomes]
rs12208502	0.84[EUR][1000 genomes]
rs12212233	0.89[EUR][1000 genomes]
rs13216684	0.92[EUR][1000 genomes]
rs13219726	0.96[EUR][1000 genomes]
rs1335424	0.83[AFR][1000 genomes]
rs1335425	0.82[AFR][1000 genomes]
rs1462476	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1563660	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1564071	0.96[EUR][1000 genomes]
rs16888110	0.98[EUR][1000 genomes]
rs1903696	0.96[EUR][1000 genomes]
rs2315263	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28706823	0.98[EUR][1000 genomes]
rs34383988	0.98[EUR][1000 genomes]
rs34606836	0.81[EUR][1000 genomes]
rs4557480	0.91[AFR][1000 genomes]
rs4706636	0.92[EUR][1000 genomes]
rs6907072	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6941496	0.91[AFR][1000 genomes]
rs7748745	0.84[EUR][1000 genomes]
rs7751083	0.96[EUR][1000 genomes]
rs7767053	0.92[EUR][1000 genomes]
rs9343518	0.96[AFR][1000 genomes]
rs9352401	0.86[AFR][1000 genomes]
rs9447838	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77545400-77552800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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