Variant report

Variant rs934709
Chromosome Location chr2:55452014-55452015
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55450600-55452400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
2 chr2:55450800-55452400 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr2:55451000-55452200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr2:55451000-55452200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
5 chr2:55451000-55452200 Weak transcription Ovary ovary
6 chr2:55451000-55452400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr2:55451000-55452400 Enhancers Left Ventricle heart
8 chr2:55451000-55452800 Enhancers Right Ventricle heart
9 chr2:55451000-55453000 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
10 chr2:55451000-55453800 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr2:55451000-55454000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr2:55451000-55454200 Weak transcription Primary B cells from cord blood blood
13 chr2:55451000-55454200 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr2:55451000-55454400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr2:55451000-55454800 Weak transcription Primary hematopoietic stem cells blood
16 chr2:55451000-55454800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr2:55451000-55454800 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr2:55451000-55454800 Weak transcription HUVEC blood vessel
19 chr2:55451000-55455000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr2:55451000-55455000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr2:55451000-55455000 Weak transcription Fetal Intestine Large intestine
22 chr2:55451000-55455000 Weak transcription Right Atrium heart
23 chr2:55451000-55455000 Weak transcription Small Intestine intestine
24 chr2:55451000-55455200 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr2:55451000-55455200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr2:55451000-55455200 Weak transcription Liver Liver
27 chr2:55451000-55455200 Weak transcription Brain Cingulate Gyrus brain
28 chr2:55451000-55455200 Weak transcription Fetal Thymus thymus
29 chr2:55451000-55455200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr2:55451000-55455400 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr2:55451000-55457200 Weak transcription NHDF-Ad bronchial
32 chr2:55451000-55457600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr2:55451000-55457600 Weak transcription HMEC breast
34 chr2:55451000-55457800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr2:55451000-55457800 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr2:55451000-55458000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr2:55451000-55458000 Weak transcription Osteobl bone
38 chr2:55451000-55458400 Weak transcription H9 Cell Line embryonic stem cell
39 chr2:55451000-55458400 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr2:55451000-55458400 Weak transcription Aorta Aorta
41 chr2:55451000-55458400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr2:55451000-55458400 Weak transcription Fetal Brain Female brain
43 chr2:55451000-55458600 Weak transcription Placenta Amnion Placenta Amnion
44 chr2:55451000-55458600 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr2:55451000-55458800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr2:55451000-55458800 Weak transcription Esophagus oesophagus
47 chr2:55451000-55458800 Weak transcription Stomach Mucosa stomach
48 chr2:55451200-55452200 Enhancers Brain Hippocampus Middle brain
49 chr2:55451200-55452400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr2:55451200-55452400 Strong transcription Primary hematopoietic stem cells short term culture blood

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