Variant report

Variant	rs9349346
Chromosome Location	chr6:12827334-12827335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10434854	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13192344	0.83[ASN][1000 genomes]
rs13192509	0.83[ASN][1000 genomes]
rs1332840	0.87[CEU][hapmap]
rs1412740	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs1412742	0.83[ASN][1000 genomes]
rs1412743	0.83[ASN][1000 genomes]
rs1412749	0.85[EUR][1000 genomes]
rs1412751	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs1537334	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1537335	0.83[ASN][1000 genomes]
rs1537336	0.83[ASN][1000 genomes]
rs1537337	0.83[ASN][1000 genomes]
rs1537338	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1537339	1.00[JPT][hapmap]
rs1571996	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1572000	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs1572002	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs16873431	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16873436	0.83[ASN][1000 genomes]
rs16873447	0.83[ASN][1000 genomes]
rs16873449	0.83[ASN][1000 genomes]
rs17617207	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs17617491	1.00[JPT][hapmap]
rs2015764	0.86[EUR][1000 genomes]
rs2026457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2065490	0.83[ASN][1000 genomes]
rs2065491	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2184027	0.83[ASN][1000 genomes]
rs35278288	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3945322	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4142300	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4711842	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4711845	0.83[ASN][1000 genomes]
rs4711848	0.81[ASN][1000 genomes]
rs4711856	1.00[JPT][hapmap]
rs4714866	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs4714868	0.86[EUR][1000 genomes]
rs4714913	0.83[ASN][1000 genomes]
rs4714930	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5017386	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs56408440	0.86[ASN][1000 genomes]
rs57387500	0.86[ASN][1000 genomes]
rs58666803	0.86[ASN][1000 genomes]
rs60954427	0.81[ASN][1000 genomes]
rs6458460	0.86[EUR][1000 genomes]
rs6458461	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs6458493	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6458494	0.83[ASN][1000 genomes]
rs6915402	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6915585	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6916397	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs6916418	0.85[EUR][1000 genomes]
rs6916421	0.85[EUR][1000 genomes]
rs6917097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6919327	0.86[EUR][1000 genomes]
rs6922969	0.85[EUR][1000 genomes]
rs6924150	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs6938417	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs6941422	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs7454135	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7757205	0.84[EUR][1000 genomes]
rs7757858	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7762547	0.85[EUR][1000 genomes]
rs7764490	0.87[EUR][1000 genomes]
rs7768030	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7776079	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9296465	0.85[EUR][1000 genomes]
rs9296486	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9296487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9296488	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9296495	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9349344	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349350	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9349352	0.83[ASN][1000 genomes]
rs9357503	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9367239	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9367240	0.83[ASN][1000 genomes]
rs9369605	0.83[ASN][1000 genomes]
rs9369607	0.83[ASN][1000 genomes]
rs9381391	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9381435	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9381436	0.83[ASN][1000 genomes]
rs9381439	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9395161	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9395162	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9395172	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs944766	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs9463106	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs9463110	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs9472551	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs9472672	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9472752	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12826000-12830400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:12826600-12827600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:12827000-12827400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:12827200-12827600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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