Variant report

Variant	rs9349456
Chromosome Location	chr6:13092759-13092760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13088282..13090116-chr6:13091669..13093301,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10807388	0.95[ASN][1000 genomes]
rs12216401	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1579135	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1937771	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132046	0.94[ASN][1000 genomes]
rs4292514	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4357136	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4367379	0.97[ASN][1000 genomes]
rs4432976	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4492189	0.95[ASN][1000 genomes]
rs4580867	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624870	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5002331	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924689	0.95[ASN][1000 genomes]
rs7738606	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748124	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369759	0.94[ASN][1000 genomes]
rs9369760	0.91[ASN][1000 genomes]
rs9369768	0.97[ASN][1000 genomes]
rs9369779	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369815	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381636	0.95[ASN][1000 genomes]
rs9395335	0.95[ASN][1000 genomes]
rs9473285	0.82[ASN][1000 genomes]
rs9473437	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9473486	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13078600-13101400	Weak transcription	Lung	lung
2	chr6:13080000-13102000	Weak transcription	Fetal Brain Female	brain
3	chr6:13080000-13105200	Weak transcription	Right Atrium	heart
4	chr6:13081800-13095200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13082200-13097000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:13082800-13095000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:13089000-13102000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:13089600-13094200	Weak transcription	Aorta	Aorta
9	chr6:13089600-13095000	Weak transcription	Fetal Heart	heart
10	chr6:13089800-13097800	Weak transcription	Left Ventricle	heart
11	chr6:13090200-13094800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:13090200-13095200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:13090200-13095600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:13090400-13095000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:13091000-13099000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:13091600-13099200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:13091800-13093000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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