Variant report

Variant	rs9349466
Chromosome Location	chr6:13122193-13122194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12206342	0.96[CEU][hapmap]
rs2327678	0.91[ASN][1000 genomes]
rs4538692	0.91[CEU][hapmap]
rs4715124	0.92[CEU][hapmap]
rs6458677	0.89[ASN][1000 genomes]
rs6909002	0.92[ASN][1000 genomes]
rs6921579	0.92[ASN][1000 genomes]
rs6941685	0.92[ASN][1000 genomes]
rs9296614	0.92[CEU][hapmap]
rs9473524	0.96[CEU][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13114400-13123400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:13115000-13135400	Weak transcription	Lung	lung
3	chr6:13116600-13123400	Weak transcription	Right Ventricle	heart
4	chr6:13119600-13122200	Enhancers	Brain Anterior Caudate	brain
5	chr6:13120200-13122200	Enhancers	Left Ventricle	heart
6	chr6:13121000-13123600	Weak transcription	Right Atrium	heart
7	chr6:13121200-13123000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:13121400-13123000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:13121600-13123000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:13121600-13123000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:13121600-13124000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:13121600-13124200	Weak transcription	Aorta	Aorta
13	chr6:13121600-13131800	Weak transcription	Fetal Heart	heart
14	chr6:13121600-13135200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:13122000-13124000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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