Variant report

Variant	rs9349774
Chromosome Location	chr6:55115722-55115723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12055777	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12055778	0.97[ASN][1000 genomes]
rs3122160	0.92[CHB][hapmap];0.95[CHD][hapmap]
rs3122162	0.90[CEU][hapmap]
rs3122164	0.84[ASW][hapmap];0.95[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap]
rs3122167	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs3134711	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074181	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4075174	0.84[ASN][1000 genomes]
rs4311511	0.94[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap]
rs4496804	0.83[CHB][hapmap]
rs4530845	0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs56843381	0.97[ASN][1000 genomes]
rs62416801	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62416821	0.99[ASN][1000 genomes]
rs6930360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7452651	0.82[JPT][hapmap]
rs7741664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754675	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7771240	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9349768	0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9349771	0.91[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs9349772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349773	0.99[ASN][1000 genomes]
rs9357850	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9357851	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes]
rs9357852	0.96[ASN][1000 genomes]
rs9357853	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357854	0.99[ASN][1000 genomes]
rs9357855	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9367625	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9367626	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9367627	0.99[ASN][1000 genomes]
rs9370407	0.99[ASN][1000 genomes]
rs9382471	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9382472	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396062	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9396069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396070	0.97[ASN][1000 genomes]
rs9396074	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396075	0.99[ASN][1000 genomes]
rs9464215	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9475206	0.96[YRI][hapmap]
rs9475208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9475210	0.96[YRI][hapmap]
rs9475211	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9475214	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9349774	KIAA1586	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55114600-55115800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr6:55114600-55115800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:55114600-55116400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:55114800-55115800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:55115000-55115800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:55115200-55115800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:55115400-55115800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:55115400-55115800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:55115600-55116000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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