Variant report
| Variant | rs9350539 |
|---|---|
| Chromosome Location | chr6:75114940-75114941 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs2635108 | 0.84[ASN][1000 genomes] |
| rs9341470 | 0.80[ASN][1000 genomes] |
| rs9343145 | 1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9343146 | 1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9343156 | 0.85[ASN][1000 genomes] |
| rs9343157 | 0.85[ASN][1000 genomes] |
| rs9343158 | 0.85[ASN][1000 genomes] |
| rs9343159 | 0.89[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9343161 | 0.82[ASN][1000 genomes] |
| rs9343164 | 0.82[ASN][1000 genomes] |
| rs9343165 | 0.83[ASN][1000 genomes] |
| rs9350535 | 0.93[ASN][1000 genomes] |
| rs9350540 | 0.94[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9350544 | 0.85[ASN][1000 genomes] |
| rs9350545 | 0.85[ASN][1000 genomes] |
| rs9350549 | 0.82[ASN][1000 genomes] |
| rs9352113 | 0.94[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9352117 | 0.83[ASN][1000 genomes] |
| rs9352118 | 0.82[ASN][1000 genomes] |
| rs9352120 | 0.82[ASN][1000 genomes] |
| rs9352122 | 0.82[ASN][1000 genomes] |
| rs9359085 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9359086 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9360790 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9360796 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758061 | chr6:74961996-75128165 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2759442 | chr6:74961996-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv35015 | chr6:75031337-75154143 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2757178 | chr6:75060947-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv886166 | chr6:75082067-75155303 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv886167 | chr6:75102625-75175449 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv886168 | chr6:75112715-75166715 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75114400-75119400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
