Variant report

Variant	rs9350540
Chromosome Location	chr6:75122052-75122053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2785683	0.82[CEU][hapmap]
rs2785685	0.82[CEU][hapmap]
rs9341470	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9343156	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343157	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343158	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343159	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9343161	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343164	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9343165	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343167	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9350539	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9350544	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350545	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350546	0.82[ASN][1000 genomes]
rs9350549	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9350552	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9352113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9352117	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9352118	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9352120	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9352122	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9352123	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9359085	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9359086	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9360790	1.00[ASW][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9360796	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9360798	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360827	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886166	chr6:75082067-75155303	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886167	chr6:75102625-75175449	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886168	chr6:75112715-75166715	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75121600-75124400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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