Variant report

Variant	rs9352063
Chromosome Location	chr6:74786250-74786251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12665051	0.89[ASN][1000 genomes]
rs1934013	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1934021	0.85[ASN][1000 genomes]
rs2486229	0.83[ASN][1000 genomes]
rs28540037	0.91[ASN][1000 genomes]
rs4706566	0.81[ASN][1000 genomes]
rs4708115	0.81[ASN][1000 genomes]
rs4708121	0.87[ASN][1000 genomes]
rs4708122	0.86[ASN][1000 genomes]
rs4708124	0.86[ASN][1000 genomes]
rs4708125	0.87[ASN][1000 genomes]
rs6921555	0.87[ASN][1000 genomes]
rs7751176	0.81[ASN][1000 genomes]
rs7751181	0.81[ASN][1000 genomes]
rs9341446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9343111	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9350522	0.87[ASN][1000 genomes]
rs9350523	0.87[ASN][1000 genomes]
rs9350524	0.86[ASN][1000 genomes]
rs9352066	0.87[ASN][1000 genomes]
rs9352067	0.87[ASN][1000 genomes]
rs9359059	0.87[ASN][1000 genomes]
rs9359060	0.87[ASN][1000 genomes]
rs9359061	0.87[ASN][1000 genomes]
rs9359062	0.87[ASN][1000 genomes]
rs9360734	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360735	0.87[ASN][1000 genomes]
rs9360736	0.87[ASN][1000 genomes]
rs9360737	0.87[ASN][1000 genomes]
rs9447153	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3440413	chr6:74741688-74791357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886161	chr6:74765488-74800529	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9352063	CD109	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74784200-74786600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:74784800-74786400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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