Variant report

Variant	rs9352088
Chromosome Location	chr6:74987577-74987578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:74987575-74987830	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr6:74987576-74987869	MCF10A-Er-Src	breast:	n/a	n/a
3	GATA3	chr6:74987525-74987960	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000217178	TF binding region

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1038684	0.83[AMR][1000 genomes]
rs10485384	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485385	0.83[AMR][1000 genomes]
rs10485386	0.83[AMR][1000 genomes]
rs10485387	0.83[AMR][1000 genomes]
rs10805997	0.83[AMR][1000 genomes]
rs12175094	0.83[AMR][1000 genomes]
rs1387417	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387418	0.83[AMR][1000 genomes]
rs1387420	0.83[AMR][1000 genomes]
rs1416395	0.82[AMR][1000 genomes]
rs1416396	0.83[AMR][1000 genomes]
rs1416397	0.81[AMR][1000 genomes]
rs1416398	0.83[AMR][1000 genomes]
rs1489380	0.83[AMR][1000 genomes]
rs1489381	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1532101	0.90[EUR][1000 genomes]
rs1552564	0.83[AMR][1000 genomes]
rs1552565	0.83[AMR][1000 genomes]
rs16884555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884558	0.83[AMR][1000 genomes]
rs16884590	0.83[AMR][1000 genomes]
rs1844317	0.83[AMR][1000 genomes]
rs1890525	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1953176	0.83[AMR][1000 genomes]
rs1953177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029393	0.83[AMR][1000 genomes]
rs2200809	0.83[AMR][1000 genomes]
rs2352082	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2635115	0.86[ASN][1000 genomes]
rs4142493	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4354109	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4706577	0.83[AMR][1000 genomes]
rs4706578	0.83[AMR][1000 genomes]
rs4706579	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4708140	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4708141	0.81[AMR][1000 genomes]
rs4708142	0.81[AMR][1000 genomes]
rs4708145	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4708146	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4708147	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56984505	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66722506	0.91[EUR][1000 genomes]
rs6917462	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7752957	0.83[AMR][1000 genomes]
rs875303	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9293958	0.83[AMR][1000 genomes]
rs9293959	0.83[AMR][1000 genomes]
rs9293960	0.83[AMR][1000 genomes]
rs9293961	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293962	0.83[AMR][1000 genomes]
rs9293964	0.83[AMR][1000 genomes]
rs9293965	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9343123	0.83[AMR][1000 genomes]
rs9343134	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9343135	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9343139	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9350532	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9352083	0.81[AMR][1000 genomes]
rs9352084	0.83[AMR][1000 genomes]
rs9352085	0.83[AMR][1000 genomes]
rs9352087	0.83[CHB][hapmap];0.83[AMR][1000 genomes]
rs9352089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352100	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9359076	0.83[AMR][1000 genomes]
rs9360757	0.81[AMR][1000 genomes]
rs9360759	0.83[AMR][1000 genomes]
rs9360761	0.83[AMR][1000 genomes]
rs9360763	0.83[AMR][1000 genomes]
rs9360768	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74987200-74987800	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr6:74987200-74988000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:74987200-74988000	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:74987200-74988000	Enhancers	HSMMtube	muscle
5	chr6:74987200-74988400	Enhancers	Fetal Kidney	kidney
6	chr6:74987200-74988800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:74987400-74987600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:74987400-74987600	Enhancers	NHDF-Ad	bronchial
9	chr6:74987400-74987800	Enhancers	Brain Hippocampus Middle	brain
10	chr6:74987400-74987800	Enhancers	Colon Smooth Muscle	Colon
11	chr6:74987400-74987800	Enhancers	Fetal Heart	heart
12	chr6:74987400-74988000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:74987400-74988000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:74987400-74988000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:74987400-74988000	Enhancers	Brain Germinal Matrix	brain
16	chr6:74987400-74988000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:74987400-74988000	Enhancers	Fetal Lung	lung
18	chr6:74987400-74988000	Enhancers	Fetal Muscle Leg	muscle
19	chr6:74987400-74988000	Enhancers	Psoas Muscle	Psoas
20	chr6:74987400-74988000	Enhancers	Right Ventricle	heart
21	chr6:74987400-74988400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:74987400-74988600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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