Variant report
| Variant | rs9352111 |
|---|---|
| Chromosome Location | chr6:75117627-75117628 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs13193052 | 0.85[EUR][1000 genomes] |
| rs1358880 | 0.91[ASN][1000 genomes] |
| rs1853183 | 0.80[ASN][1000 genomes] |
| rs2635109 | 0.85[ASN][1000 genomes] |
| rs2756333 | 0.85[ASN][1000 genomes] |
| rs2756336 | 0.85[ASN][1000 genomes] |
| rs278318 | 0.85[ASN][1000 genomes] |
| rs4706582 | 0.81[EUR][1000 genomes] |
| rs507271 | 0.84[ASN][1000 genomes] |
| rs508269 | 0.85[ASN][1000 genomes] |
| rs515393 | 0.85[ASN][1000 genomes] |
| rs526770 | 0.85[ASN][1000 genomes] |
| rs527658 | 0.85[ASN][1000 genomes] |
| rs594174 | 0.85[ASN][1000 genomes] |
| rs67813921 | 0.85[EUR][1000 genomes] |
| rs6933585 | 0.81[ASN][1000 genomes] |
| rs693375 | 0.81[ASN][1000 genomes] |
| rs694723 | 0.85[ASN][1000 genomes] |
| rs716314 | 0.81[ASN][1000 genomes] |
| rs7742773 | 0.81[ASN][1000 genomes] |
| rs7744739 | 0.81[EUR][1000 genomes] |
| rs795855 | 0.85[ASN][1000 genomes] |
| rs9341467 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9343154 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9343160 | 0.88[ASN][1000 genomes] |
| rs9343166 | 0.85[ASN][1000 genomes] |
| rs9352110 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9352116 | 0.81[EUR][1000 genomes] |
| rs9352121 | 0.87[ASN][1000 genomes] |
| rs9360788 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9443037 | 0.81[ASN][1000 genomes] |
| rs9447201 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758061 | chr6:74961996-75128165 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2759442 | chr6:74961996-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv35015 | chr6:75031337-75154143 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2757178 | chr6:75060947-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv886166 | chr6:75082067-75155303 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv886167 | chr6:75102625-75175449 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv886168 | chr6:75112715-75166715 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75114400-75119400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr6:75117600-75118200 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
