Variant report
| Variant | rs9352121 |
|---|---|
| Chromosome Location | chr6:75152993-75152994 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs13193052 | 0.82[EUR][1000 genomes] |
| rs1853183 | 0.88[ASN][1000 genomes] |
| rs2095374 | 0.85[ASN][1000 genomes] |
| rs6453754 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs67813921 | 0.82[EUR][1000 genomes] |
| rs6932157 | 0.87[ASN][1000 genomes] |
| rs6933585 | 0.87[ASN][1000 genomes] |
| rs6937677 | 0.85[ASN][1000 genomes] |
| rs716314 | 0.89[ASN][1000 genomes] |
| rs7742773 | 0.87[ASN][1000 genomes] |
| rs9341467 | 0.82[ASN][1000 genomes] |
| rs9341470 | 0.83[AFR][1000 genomes] |
| rs9343160 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9343161 | 0.90[AFR][1000 genomes] |
| rs9343164 | 0.90[AFR][1000 genomes] |
| rs9343166 | 0.80[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9343171 | 0.84[ASN][1000 genomes] |
| rs9343172 | 0.81[AFR][1000 genomes] |
| rs9350549 | 0.88[AFR][1000 genomes] |
| rs9350552 | 0.83[AFR][1000 genomes] |
| rs9352110 | 0.86[ASN][1000 genomes] |
| rs9352111 | 0.87[ASN][1000 genomes] |
| rs9352118 | 0.85[AFR][1000 genomes] |
| rs9352119 | 0.80[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9352120 | 0.88[AFR][1000 genomes] |
| rs9352122 | 0.88[AFR][1000 genomes] |
| rs9352123 | 0.83[AFR][1000 genomes] |
| rs9352125 | 0.93[AFR][1000 genomes] |
| rs9360788 | 0.84[ASN][1000 genomes] |
| rs9360796 | 0.83[AFR][1000 genomes] |
| rs9443037 | 0.89[ASN][1000 genomes] |
| rs9447201 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2759442 | chr6:74961996-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv35015 | chr6:75031337-75154143 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2757178 | chr6:75060947-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886166 | chr6:75082067-75155303 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv886167 | chr6:75102625-75175449 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv886168 | chr6:75112715-75166715 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75149800-75155800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
