Variant report

Variant	rs9352784
Chromosome Location	chr6:80604130-80604131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1007416	0.94[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs13191201	0.89[EUR][1000 genomes]
rs13199685	0.83[EUR][1000 genomes]
rs13201038	0.94[CEU][hapmap];0.89[CHB][hapmap];0.88[EUR][1000 genomes]
rs13207287	0.88[EUR][1000 genomes]
rs13216035	0.88[EUR][1000 genomes]
rs1398161	0.94[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs1398162	0.89[EUR][1000 genomes]
rs1398163	0.88[EUR][1000 genomes]
rs1398164	0.88[EUR][1000 genomes]
rs1512117	0.91[AFR][1000 genomes]
rs1512118	0.88[EUR][1000 genomes]
rs151666	0.94[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs151667	0.84[EUR][1000 genomes]
rs151671	0.86[EUR][1000 genomes]
rs16891260	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs1742475	0.87[EUR][1000 genomes]
rs2322554	0.94[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs239517	0.86[EUR][1000 genomes]
rs239520	0.94[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs239526	0.83[CEU][hapmap];0.88[CHB][hapmap]
rs239527	0.84[EUR][1000 genomes]
rs239529	0.94[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs239532	0.94[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs2991	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs343618	0.87[EUR][1000 genomes]
rs343623	0.89[CHB][hapmap]
rs343627	0.87[EUR][1000 genomes]
rs343628	0.94[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes]
rs343629	0.89[CHB][hapmap]
rs343693	0.89[EUR][1000 genomes]
rs343694	0.89[EUR][1000 genomes]
rs343696	0.88[EUR][1000 genomes]
rs343697	0.88[EUR][1000 genomes]
rs343698	0.87[EUR][1000 genomes]
rs343705	0.89[CHB][hapmap]
rs35163932	0.87[EUR][1000 genomes]
rs36067513	0.88[EUR][1000 genomes]
rs3812153	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs4706806	0.91[AFR][1000 genomes]
rs4706819	0.88[EUR][1000 genomes]
rs6454139	0.88[EUR][1000 genomes]
rs6928446	0.88[EUR][1000 genomes]
rs71565059	0.88[EUR][1000 genomes]
rs7743696	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs7754628	0.94[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs7754984	0.86[EUR][1000 genomes]
rs7770586	0.87[EUR][1000 genomes]
rs865264	0.88[CHB][hapmap]
rs9443725	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9443726	0.84[EUR][1000 genomes]
rs9448853	0.89[EUR][1000 genomes]
rs9448857	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs9448858	0.88[EUR][1000 genomes]
rs9448861	0.86[EUR][1000 genomes]
rs9448862	0.86[EUR][1000 genomes]
rs9448863	0.94[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3693359	chr6:80539454-80606537	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3475140	chr6:80592690-80679283	Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3475142	chr6:80592789-80679132	Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80601200-80604600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:80603600-80606600	Enhancers	HMEC	breast

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