Variant report

Variant	rs9357634
Chromosome Location	chr6:13192190-13192191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:64636119..64638158-chr6:13191283..13192914,2	MCF-7	breast:
2	chr6:13184861..13186722-chr6:13190898..13192711,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10948524	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11757278	0.88[EUR][1000 genomes]
rs12527257	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12528399	0.90[EUR][1000 genomes]
rs16869294	0.84[EUR][1000 genomes]
rs16873682	0.90[EUR][1000 genomes]
rs3778646	0.90[EUR][1000 genomes]
rs3823445	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3864309	0.92[EUR][1000 genomes]
rs3864310	0.89[EUR][1000 genomes]
rs3864311	0.84[EUR][1000 genomes]
rs4097413	0.90[EUR][1000 genomes]
rs4715132	0.85[EUR][1000 genomes]
rs62385532	0.84[EUR][1000 genomes]
rs9349494	0.85[EUR][1000 genomes]
rs9349501	0.95[EUR][1000 genomes]
rs9349502	0.95[EUR][1000 genomes]
rs9357620	0.84[EUR][1000 genomes]
rs9367368	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367369	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9369915	0.94[EUR][1000 genomes]
rs9369916	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369917	0.95[EUR][1000 genomes]
rs9381807	0.90[EUR][1000 genomes]
rs9381809	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9381810	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9381812	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9381818	0.95[EUR][1000 genomes]
rs9381819	0.95[EUR][1000 genomes]
rs9395497	0.85[EUR][1000 genomes]
rs9395520	0.87[EUR][1000 genomes]
rs9463511	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv10481	chr6:13191100-13192936	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:13182000-13205400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
4	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:13182200-13192800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:13183000-13195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:13183000-13207000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:13184200-13197000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:13185000-13202800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:13185200-13204000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:13185200-13205200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:13185400-13192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:13185400-13204800	Weak transcription	Lung	lung
16	chr6:13185400-13205800	Weak transcription	Aorta	Aorta
17	chr6:13185400-13205800	Weak transcription	Pancreas	Pancrea
18	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
19	chr6:13187800-13192600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:13189400-13196000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:13191000-13193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:13191200-13192400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:13191200-13192400	Enhancers	Fetal Intestine Small	intestine
24	chr6:13191200-13204400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:13191400-13193400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:13191600-13192200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr6:13191600-13193000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:13191600-13193400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:13191600-13193400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:13191600-13193400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr6:13191600-13193400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:13191600-13193600	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:13191600-13195400	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:13191800-13193200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:13191800-13210800	Weak transcription	Fetal Heart	heart
36	chr6:13192000-13192600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:13192000-13197000	Weak transcription	Left Ventricle	heart
38	chr6:13192000-13205600	Weak transcription	Right Ventricle	heart

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