Variant report

Variant	rs9359077
Chromosome Location	chr6:74982166-74982167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11752920	0.91[EUR][1000 genomes]
rs11758445	0.91[EUR][1000 genomes]
rs16884519	0.89[EUR][1000 genomes]
rs16884624	0.91[EUR][1000 genomes]
rs16884690	0.89[EUR][1000 genomes]
rs1817735	0.91[EUR][1000 genomes]
rs3898077	0.85[EUR][1000 genomes]
rs55962148	0.85[EUR][1000 genomes]
rs56020332	0.91[EUR][1000 genomes]
rs56168817	0.89[EUR][1000 genomes]
rs56232317	0.85[EUR][1000 genomes]
rs67076726	0.91[EUR][1000 genomes]
rs6926572	0.89[EUR][1000 genomes]
rs72953763	0.91[EUR][1000 genomes]
rs72957983	0.89[EUR][1000 genomes]
rs72957986	0.89[EUR][1000 genomes]
rs72957999	0.89[EUR][1000 genomes]
rs72959615	0.91[EUR][1000 genomes]
rs72959617	0.85[EUR][1000 genomes]
rs72959619	0.91[EUR][1000 genomes]
rs72967265	0.91[EUR][1000 genomes]
rs72967284	0.91[EUR][1000 genomes]
rs72967286	0.91[EUR][1000 genomes]
rs7755776	0.89[EUR][1000 genomes]
rs7776273	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv7920	chr6:74979517-74986088	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74979400-74987400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:74979600-74983800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links