Variant report

Variant	rs9361620
Chromosome Location	chr6:81147783-81147784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10943707	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10943708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10943709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212019	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12213737	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13208124	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2917622	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs486831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs549951	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs560670	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565531	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs9449074	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81142400-81163800	Weak transcription	Ovary	ovary
2	chr6:81143400-81148400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:81143400-81156000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:81143600-81152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:81143600-81155600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:81143800-81148400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:81143800-81148400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:81144800-81148400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:81145000-81148000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:81145000-81149400	Weak transcription	HepG2	liver
11	chr6:81145400-81148400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:81146400-81149400	Enhancers	Osteobl	bone
13	chr6:81146400-81149800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:81146400-81150000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:81146600-81156000	Weak transcription	Pancreas	Pancrea
16	chr6:81147000-81149000	Enhancers	NHLF	lung
17	chr6:81147000-81150400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:81147000-81150600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:81147000-81150600	Enhancers	NH-A	brain
20	chr6:81147000-81150800	Enhancers	NHEK	skin
21	chr6:81147200-81147800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:81147200-81148400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:81147200-81149200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:81147200-81150000	Enhancers	NHDF-Ad	bronchial
25	chr6:81147400-81147800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr6:81147400-81150800	Enhancers	HUVEC	blood vessel
27	chr6:81147600-81147800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:81147600-81148000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:81147600-81148000	ZNF genes & repeats	HSMM	muscle
30	chr6:81147600-81149000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:81147600-81149200	Enhancers	Brain Germinal Matrix	brain
32	chr6:81147600-81150200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:81147600-81150800	Enhancers	Hela-S3	cervix

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