Variant report

Variant	rs9361991
Chromosome Location	chr6:64342103-64342104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
PHF3	TF binding region
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6905574	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9294269	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9361991	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64338000-64342400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:64340600-64342600	Weak transcription	K562	blood
3	chr6:64340800-64342400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:64340800-64342600	Weak transcription	HepG2	liver
5	chr6:64341000-64342200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:64341000-64344600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:64341000-64344600	Weak transcription	Fetal Intestine Small	intestine
8	chr6:64341000-64344800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:64341600-64344800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:64341800-64344600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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