Variant report

Variant	rs9365620
Chromosome Location	chr6:164256433-164256434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164255106..164256985-chr6:164259960..164261989,2	K562	blood:
2	chr6:164253956..164257557-chr6:164262191..164265409,3	K562	blood:
3	chr6:164251847..164253881-chr6:164255463..164257688,2	K562	blood:

Variant related genes	Relation type
ENSG00000266128	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1040641	0.96[ASN][1000 genomes]
rs10806784	0.80[EUR][1000 genomes]
rs10945921	0.85[CHB][hapmap]
rs1111705	0.93[ASN][1000 genomes]
rs13203619	0.95[ASN][1000 genomes]
rs1555229	0.82[CHB][hapmap]
rs2015261	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2321978	0.86[CHB][hapmap]
rs2321979	0.85[CHB][hapmap]
rs4709760	0.93[ASN][1000 genomes]
rs4709765	0.96[ASN][1000 genomes]
rs4709766	0.95[ASN][1000 genomes]
rs4709769	0.86[CHB][hapmap]
rs4709773	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4709775	0.80[EUR][1000 genomes]
rs6925383	0.88[ASN][1000 genomes]
rs7740670	0.81[CHB][hapmap]
rs7762180	0.88[ASN][1000 genomes]
rs7765258	0.87[ASN][1000 genomes]
rs8180622	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs880095	0.98[ASN][1000 genomes]
rs9295231	0.94[ASN][1000 genomes]
rs9295232	0.97[ASN][1000 genomes]
rs9295233	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295234	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9346974	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346975	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9347790	0.86[ASN][1000 genomes]
rs9347791	0.94[ASN][1000 genomes]
rs9347792	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9347793	0.96[ASN][1000 genomes]
rs9347798	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9347799	0.81[EUR][1000 genomes]
rs9355439	0.95[ASN][1000 genomes]
rs9355440	0.98[ASN][1000 genomes]
rs9355441	0.85[CHB][hapmap]
rs9355442	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9356148	0.81[ASN][1000 genomes]
rs9356152	0.87[ASN][1000 genomes]
rs9356153	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9356156	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9364701	0.82[ASN][1000 genomes]
rs9364703	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9365619	0.98[ASN][1000 genomes]
rs9456883	0.84[ASN][1000 genomes]
rs9456885	0.96[ASN][1000 genomes]
rs9458911	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164250000-164258200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164255600-164256800	Weak transcription	Brain Germinal Matrix	brain
3	chr6:164255800-164258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:164256000-164258400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:164256400-164256800	Flanking Active TSS	Fetal Heart	heart

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