Variant report

Variant	rs9367308
Chromosome Location	chr6:13027002-13027003
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13026402..13029153-chr6:13041803..13044257,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11757001	0.81[CEU][hapmap]
rs11759412	0.84[EUR][1000 genomes]
rs13215098	0.81[CEU][hapmap]
rs17323391	0.81[CEU][hapmap]
rs17375084	0.81[CEU][hapmap]
rs28360598	0.82[EUR][1000 genomes]
rs35241555	0.82[EUR][1000 genomes]
rs35684248	0.84[EUR][1000 genomes]
rs4129937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131857	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4132045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236098	0.95[EUR][1000 genomes]
rs4329096	0.81[CEU][hapmap]
rs4331981	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs4616991	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715065	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715068	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715069	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6458624	0.81[CEU][hapmap]
rs6907651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936052	0.85[EUR][1000 genomes]
rs73366282	0.83[ASN][1000 genomes]
rs7762786	0.81[CEU][hapmap]
rs7775760	0.81[CEU][hapmap]
rs9349439	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349440	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381635	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381638	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9395336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13015600-13027600	Weak transcription	Right Atrium	heart
2	chr6:13015800-13029000	Weak transcription	Pancreas	Pancrea
3	chr6:13020800-13028800	Weak transcription	Left Ventricle	heart
4	chr6:13024600-13027600	Enhancers	Brain Angular Gyrus	brain
5	chr6:13024600-13030800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:13024800-13027400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:13025600-13027600	Enhancers	Fetal Brain Male	brain
8	chr6:13025600-13031800	Enhancers	Fetal Heart	heart
9	chr6:13026000-13027400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:13026000-13027800	Enhancers	Brain Anterior Caudate	brain
11	chr6:13026000-13031200	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:13026200-13027200	Enhancers	Fetal Stomach	stomach
13	chr6:13026200-13027400	Enhancers	HSMM	muscle
14	chr6:13026400-13028000	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:13026600-13027200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:13026600-13027400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:13026600-13028000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:13026600-13034600	Weak transcription	Fetal Brain Female	brain
19	chr6:13026800-13027200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:13026800-13027800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:13027000-13027200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:13027000-13027200	Enhancers	Stomach Smooth Muscle	stomach
23	chr6:13027000-13027400	Enhancers	Aorta	Aorta
24	chr6:13027000-13027600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:13027000-13027600	Weak transcription	Lung	lung
26	chr6:13027000-13028000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:13027000-13029000	Weak transcription	Right Ventricle	heart
28	chr6:13027000-13030200	Weak transcription	NHDF-Ad	bronchial
29	chr6:13027000-13030800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:13027000-13031000	Weak transcription	HSMMtube	muscle
31	chr6:13027000-13032600	Weak transcription	Colon Smooth Muscle	Colon

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