Variant report

Variant	rs9367700
Chromosome Location	chr6:56822399-56822400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56819016..56821758-chr6:56822095..56823994,2	K562	blood:
2	chr6:56821886..56823483-chr6:56846659..56848373,2	MCF-7	breast:
3	chr6:56813560..56816424-chr6:56821895..56824578,2	K562	blood:
4	chr6:56820475..56822704-chr6:56829156..56832250,3	MCF-7	breast:
5	chr6:56818533..56822842-chr6:56954657..56959004,6	K562	blood:
6	chr6:56821970..56823839-chr6:57043056..57044628,2	K562	blood:
7	chr6:56817498..56822021-chr6:56822095..56825634,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151917	Chromatin interaction
ENSG00000112200	Chromatin interaction
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1007417	0.99[ASN][1000 genomes]
rs1016048	1.00[ASN][1000 genomes]
rs10498814	0.96[EUR][1000 genomes]
rs12175661	0.96[EUR][1000 genomes]
rs13205191	0.96[EUR][1000 genomes]
rs1597694	0.99[ASN][1000 genomes]
rs16888268	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17685356	0.99[ASN][1000 genomes]
rs17758527	0.96[EUR][1000 genomes]
rs17758663	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2006930	0.99[ASN][1000 genomes]
rs2008698	1.00[ASN][1000 genomes]
rs2306011	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28498151	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34589109	0.96[ASN][1000 genomes]
rs34703235	0.94[ASN][1000 genomes]
rs34896907	0.97[ASN][1000 genomes]
rs35553446	1.00[ASN][1000 genomes]
rs4576249	0.96[EUR][1000 genomes]
rs57994994	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58099889	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58332182	0.88[EUR][1000 genomes]
rs59106338	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60401134	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60910121	0.92[EUR][1000 genomes]
rs62411412	0.88[EUR][1000 genomes]
rs62411417	0.92[EUR][1000 genomes]
rs62411418	0.92[EUR][1000 genomes]
rs62411419	0.92[EUR][1000 genomes]
rs62411420	0.96[EUR][1000 genomes]
rs62411421	0.96[EUR][1000 genomes]
rs62411422	0.96[EUR][1000 genomes]
rs62411423	0.96[EUR][1000 genomes]
rs62411425	0.96[EUR][1000 genomes]
rs62411430	0.96[EUR][1000 genomes]
rs62417377	0.96[EUR][1000 genomes]
rs62417378	0.94[EUR][1000 genomes]
rs62417384	1.00[ASN][1000 genomes]
rs62417385	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417410	0.99[ASN][1000 genomes]
rs6901192	0.90[ASN][1000 genomes]
rs6901660	0.99[ASN][1000 genomes]
rs6915492	0.99[ASN][1000 genomes]
rs6924882	0.99[ASN][1000 genomes]
rs6935636	0.99[ASN][1000 genomes]
rs720885	0.90[ASN][1000 genomes]
rs7760435	1.00[ASN][1000 genomes]
rs9349842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9357936	0.96[EUR][1000 genomes]
rs9367701	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367702	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370552	0.99[ASN][1000 genomes]
rs9370553	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370554	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382669	1.00[ASN][1000 genomes]
rs9382670	1.00[ASN][1000 genomes]
rs9382673	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382674	0.99[ASN][1000 genomes]
rs9382675	0.99[ASN][1000 genomes]
rs9396238	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396240	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396245	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396246	1.00[ASN][1000 genomes]
rs9396249	0.99[ASN][1000 genomes]
rs9396251	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396254	0.96[EUR][1000 genomes]
rs9464411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464412	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464413	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475757	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475758	1.00[ASN][1000 genomes]
rs9475760	1.00[ASN][1000 genomes]
rs9475761	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9475762	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475763	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1022714	chr6:56729767-56826642	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv538229	chr6:56729767-56826642	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56820800-56822400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:56821000-56822800	Weak transcription	HSMM	muscle
3	chr6:56821000-56823000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:56821000-56823400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:56821000-56824600	Weak transcription	HSMMtube	muscle
6	chr6:56821000-56824600	Weak transcription	HUVEC	blood vessel
7	chr6:56821200-56823600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:56821400-56822800	Weak transcription	NH-A	brain
9	chr6:56821400-56823000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:56821600-56822800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:56821600-56822800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:56821600-56822800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:56821600-56823000	Weak transcription	Hela-S3	cervix
14	chr6:56821600-56823000	Weak transcription	Osteobl	bone
15	chr6:56821600-56823400	Weak transcription	A549	lung
16	chr6:56821600-56823600	Enhancers	NHDF-Ad	bronchial
17	chr6:56821600-56823800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:56821600-56823800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:56821600-56824000	Weak transcription	HMEC	breast
20	chr6:56821600-56824000	Weak transcription	NHEK	skin
21	chr6:56821800-56822800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:56821800-56822800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:56821800-56822800	Weak transcription	NHLF	lung
24	chr6:56822000-56823200	Weak transcription	K562	blood

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