Variant report

Variant	rs9369101
Chromosome Location	chr6:12127247-12127248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16872277	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734271	0.98[ASN][1000 genomes]
rs3777754	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777758	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777762	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822926	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718117	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907440	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916455	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6928420	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6940075	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72826076	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72826081	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826086	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826088	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826091	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751398	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366980	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369074	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9369106	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394540	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394541	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12116000-12128000	Weak transcription	Fetal Heart	heart
3	chr6:12117200-12136800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:12118400-12138400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:12118800-12131400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:12119400-12129800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:12119800-12138800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:12120000-12128800	Strong transcription	Liver	Liver
9	chr6:12120200-12129000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:12120400-12128200	Strong transcription	HSMM	muscle
11	chr6:12120400-12129000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:12121400-12128000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:12121400-12128000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:12121400-12150200	Weak transcription	Fetal Brain Male	brain
15	chr6:12121600-12136800	Weak transcription	Hela-S3	cervix
16	chr6:12122000-12134600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:12122000-12136600	Weak transcription	Osteobl	bone
18	chr6:12122000-12138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:12122200-12128400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:12122200-12132200	Weak transcription	A549	lung
21	chr6:12122200-12132200	Weak transcription	NHLF	lung
22	chr6:12122200-12137600	Weak transcription	Brain Anterior Caudate	brain
23	chr6:12122200-12137600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:12122200-12137600	Weak transcription	Brain Substantia Nigra	brain
25	chr6:12122200-12137800	Weak transcription	HMEC	breast
26	chr6:12122200-12138600	Weak transcription	Colonic Mucosa	Colon
27	chr6:12122200-12138600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:12122200-12138600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:12122200-12138800	Weak transcription	Ovary	ovary
30	chr6:12122200-12138800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:12122200-12139000	Weak transcription	Spleen	Spleen
32	chr6:12122200-12139200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:12122200-12161800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:12122400-12130600	Weak transcription	Pancreas	Pancrea
35	chr6:12122400-12136400	Weak transcription	Small Intestine	intestine
36	chr6:12122400-12138200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:12122400-12138600	Weak transcription	Lung	lung
38	chr6:12122400-12139200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:12122400-12139200	Weak transcription	Placenta	Placenta
40	chr6:12122400-12139800	Weak transcription	Esophagus	oesophagus
41	chr6:12122600-12136000	Weak transcription	Fetal Lung	lung
42	chr6:12122600-12138200	Weak transcription	Primary B cells from cord blood	blood
43	chr6:12122600-12139000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:12122800-12128400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:12122800-12130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:12122800-12130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:12122800-12132800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:12122800-12137200	Weak transcription	NHDF-Ad	bronchial
49	chr6:12122800-12137800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:12122800-12138400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links