Variant report

Variant	rs9369760
Chromosome Location	chr6:13024123-13024124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10807388	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11758659	0.89[EUR][1000 genomes]
rs12216401	0.91[ASN][1000 genomes]
rs1579135	0.86[ASN][1000 genomes]
rs1937771	0.89[ASN][1000 genomes]
rs34576660	0.82[EUR][1000 genomes]
rs4132046	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4236097	0.81[EUR][1000 genomes]
rs4292514	0.91[ASN][1000 genomes]
rs4349811	0.89[EUR][1000 genomes]
rs4357136	0.89[ASN][1000 genomes]
rs4367379	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4432976	0.91[ASN][1000 genomes]
rs4492189	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4580867	0.91[ASN][1000 genomes]
rs4624870	0.90[ASN][1000 genomes]
rs4715048	0.89[EUR][1000 genomes]
rs5002331	0.91[ASN][1000 genomes]
rs6924689	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7341250	0.89[EUR][1000 genomes]
rs7738606	0.91[ASN][1000 genomes]
rs7748124	0.93[ASN][1000 genomes]
rs9349456	0.91[ASN][1000 genomes]
rs9369759	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369768	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369779	0.86[ASN][1000 genomes]
rs9369815	0.89[ASN][1000 genomes]
rs9381636	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9395335	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9463363	0.89[EUR][1000 genomes]
rs9463364	0.88[EUR][1000 genomes]
rs9473198	0.89[EUR][1000 genomes]
rs9473437	0.89[ASN][1000 genomes]
rs9473486	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13015000-13026000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:13015000-13026400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:13015200-13024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:13015400-13024400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:13015600-13027600	Weak transcription	Right Atrium	heart
6	chr6:13015800-13024600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:13015800-13024600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:13015800-13029000	Weak transcription	Pancreas	Pancrea
9	chr6:13016200-13025800	Weak transcription	Fetal Brain Female	brain
10	chr6:13016200-13025800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:13020800-13028800	Weak transcription	Left Ventricle	heart
12	chr6:13021200-13026000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:13021200-13026200	Weak transcription	Aorta	Aorta
14	chr6:13021800-13026200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:13023800-13024200	Enhancers	Right Ventricle	heart
16	chr6:13023800-13025000	Enhancers	Brain Anterior Caudate	brain
17	chr6:13023800-13025200	Enhancers	Fetal Heart	heart
18	chr6:13023800-13025400	Enhancers	Brain Hippocampus Middle	brain
19	chr6:13023800-13026400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:13024000-13024800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:13024000-13026400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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