Variant report

Variant	rs9370397
Chromosome Location	chr6:55038955-55038956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3800540	1.00[JPT][hapmap]
rs9349762	1.00[JPT][hapmap]
rs9349763	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9349764	0.94[ASN][1000 genomes]
rs9357846	1.00[JPT][hapmap]
rs9370398	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370402	1.00[JPT][hapmap]
rs9382459	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs9382461	1.00[JPT][hapmap]
rs9382462	1.00[JPT][hapmap]
rs9396058	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55038800-55039000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:55038800-55039800	Active TSS	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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