Variant report

Variant	rs9370493
Chromosome Location	chr6:56083108-56083109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56081250..56083169-chr6:56099533..56102275,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1012257	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1033478	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1205109	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1319112	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555097	0.91[ASN][1000 genomes]
rs1925138	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1925141	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925147	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1925177	0.91[ASN][1000 genomes]
rs2328677	0.81[AMR][1000 genomes]
rs2397206	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2397209	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2745366	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2745369	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2764048	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2840989	0.91[ASN][1000 genomes]
rs2840990	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2840995	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2841000	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3846918	0.91[ASN][1000 genomes]
rs3846921	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3857611	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3996940	0.95[ASN][1000 genomes]
rs4715591	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4715592	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4715597	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6459127	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6909268	0.95[ASN][1000 genomes]
rs6927919	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6939632	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774374	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9382583	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56080800-56084600	Weak transcription	A549	lung
3	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle

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