Variant report

Variant	rs9370822
Chromosome Location	chr6:15544736-15544737
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15543789..15545954-chr6:16267573..16269567,2	K562	blood:
2	chr6:15544544..15546827-chr6:15547014..15548518,2	K562	blood:
3	chr6:15544432..15546754-chr6:15629277..15631800,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12207867	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2619539	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2743868	0.86[JPT][hapmap]
rs4236167	0.86[JPT][hapmap];0.82[YRI][hapmap]
rs4498340	0.81[ASN][1000 genomes]
rs4712254	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6909929	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6926622	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs909706	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9349981	0.82[ASN][1000 genomes]
rs9349982	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9396592	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9476870	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv522265	chr6:15494177-15546213	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15524400-15549400	Weak transcription	Hela-S3	cervix
2	chr6:15524800-15549800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:15525000-15553400	Weak transcription	Ovary	ovary
4	chr6:15528400-15547400	Weak transcription	Fetal Kidney	kidney
5	chr6:15528600-15546800	Weak transcription	Fetal Lung	lung
6	chr6:15529400-15549800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:15531800-15545800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:15532600-15549800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:15533600-15551000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:15534000-15551600	Weak transcription	Aorta	Aorta
11	chr6:15534400-15551000	Weak transcription	K562	blood
12	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
13	chr6:15537000-15549800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:15537000-15550000	Weak transcription	Psoas Muscle	Psoas
15	chr6:15537000-15551000	Weak transcription	Left Ventricle	heart
16	chr6:15537000-15551600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:15537000-15551800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:15537000-15554400	Weak transcription	Fetal Intestine Large	intestine
19	chr6:15537200-15546000	Weak transcription	Right Atrium	heart
20	chr6:15537400-15546000	Weak transcription	Fetal Stomach	stomach
21	chr6:15539600-15546000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:15539800-15554000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:15540000-15546000	Weak transcription	Lung	lung
24	chr6:15540000-15550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:15540000-15551800	Weak transcription	Gastric	stomach
26	chr6:15540200-15546800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:15540200-15551000	Weak transcription	Pancreas	Pancrea
28	chr6:15541600-15547000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:15543400-15545400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:15543600-15544800	ZNF genes & repeats	GM12878-XiMat	blood
31	chr6:15543600-15545200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:15544000-15544800	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr6:15544000-15545000	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr6:15544000-15545000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr6:15544000-15545000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr6:15544000-15545200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
37	chr6:15544200-15545200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:15544200-15551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:15544600-15544800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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