Variant report

Variant	rs9371461
Chromosome Location	chr6:150868052-150868053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150858643..150861809-chr6:150864654..150868383,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1492574	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4304173	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4311527	0.81[ASN][1000 genomes]
rs4478418	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6908890	0.88[JPT][hapmap]
rs6911586	0.81[ASN][1000 genomes]
rs7745789	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7764084	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9372072	0.88[ASN][1000 genomes]
rs9384546	0.81[ASN][1000 genomes]
rs9384551	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9384557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397330	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9398015	0.81[ASN][1000 genomes]
rs9398016	0.81[ASN][1000 genomes]
rs9398017	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150864200-150868400	Weak transcription	Fetal Lung	lung
2	chr6:150866200-150871000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150867000-150869000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:150867000-150869200	Enhancers	Fetal Heart	heart
5	chr6:150867400-150868600	Bivalent Enhancer	HepG2	liver
6	chr6:150867400-150869000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:150867400-150869000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150867400-150869000	Enhancers	Brain Substantia Nigra	brain
9	chr6:150867400-150869200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:150867400-150869200	Enhancers	Right Atrium	heart
11	chr6:150867400-150869400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:150867400-150869400	Enhancers	Right Ventricle	heart
13	chr6:150867400-150869800	Enhancers	Fetal Kidney	kidney
14	chr6:150867600-150868800	Enhancers	Brain Angular Gyrus	brain
15	chr6:150867600-150869000	Enhancers	Brain Anterior Caudate	brain
16	chr6:150867600-150869000	Enhancers	Brain Germinal Matrix	brain
17	chr6:150867600-150869000	Enhancers	Fetal Muscle Trunk	muscle
18	chr6:150867600-150869000	Enhancers	Fetal Stomach	stomach
19	chr6:150867600-150869000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:150867600-150869400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr6:150867600-150869600	Enhancers	Liver	Liver
22	chr6:150867600-150869600	Enhancers	Ovary	ovary
23	chr6:150867800-150868200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:150867800-150868600	Enhancers	Brain Hippocampus Middle	brain
25	chr6:150867800-150869000	Enhancers	Left Ventricle	heart
26	chr6:150867800-150869200	Enhancers	Placenta	Placenta
27	chr6:150867800-150869400	Enhancers	Spleen	Spleen
28	chr6:150868000-150869000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:150868000-150869000	Enhancers	Adipose Nuclei	Adipose
30	chr6:150868000-150870200	Weak transcription	Lung	lung
31	chr6:150868000-150870800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:150868000-150871200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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