Variant report

Variant	rs9372012
Chromosome Location	chr6:150724581-150724582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150723506..150725309-chr6:150728737..150730322,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11962096	0.97[EUR][1000 genomes]
rs11969964	1.00[CEU][hapmap];0.92[GIH][hapmap];0.85[EUR][1000 genomes]
rs12208588	0.96[GIH][hapmap];0.88[JPT][hapmap]
rs12530375	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes]
rs1339104	0.85[EUR][1000 genomes]
rs1339105	0.85[EUR][1000 genomes]
rs1339106	0.85[EUR][1000 genomes]
rs1339107	0.85[EUR][1000 genomes]
rs1339110	1.00[CEU][hapmap]
rs1416481	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556881	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs2064213	0.85[EUR][1000 genomes]
rs2076284	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap]
rs2076285	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs2076286	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes]
rs2076287	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs2076288	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs2076289	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs2076290	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs2076291	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs2076292	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs3734734	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs3823259	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes]
rs3823260	0.94[EUR][1000 genomes]
rs4407723	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs5029121	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs57538858	0.82[EUR][1000 genomes]
rs60702386	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62432478	0.82[EUR][1000 genomes]
rs62432482	0.85[EUR][1000 genomes]
rs62432483	0.85[EUR][1000 genomes]
rs62432484	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62432506	0.91[EUR][1000 genomes]
rs62432511	0.91[EUR][1000 genomes]
rs62432540	0.97[EUR][1000 genomes]
rs62432541	0.97[EUR][1000 genomes]
rs62432542	0.97[EUR][1000 genomes]
rs6909655	0.97[EUR][1000 genomes]
rs6911086	0.96[GIH][hapmap]
rs6921360	0.97[EUR][1000 genomes]
rs73617698	0.94[EUR][1000 genomes]
rs7740863	0.80[ASN][1000 genomes]
rs7745569	0.91[EUR][1000 genomes]
rs7761373	0.85[EUR][1000 genomes]
rs7761906	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs7762616	0.84[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes]
rs7763368	0.81[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs7768510	0.81[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs7770389	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7774077	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs9322259	0.91[EUR][1000 genomes]
rs9371429	0.85[EUR][1000 genomes]
rs9371437	0.85[EUR][1000 genomes]
rs9383808	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9384445	1.00[CEU][hapmap]
rs9384472	0.91[EUR][1000 genomes]
rs9384473	0.91[EUR][1000 genomes]
rs9384476	0.88[EUR][1000 genomes]
rs9397292	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[EUR][1000 genomes]
rs9397302	0.91[EUR][1000 genomes]
rs9397303	0.92[GIH][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs9397944	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs9397954	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464078	chr6:150720439-150729878	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv604849	chr6:150720439-150729878	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150721800-150729800	Weak transcription	Liver	Liver
2	chr6:150723800-150725400	Enhancers	Fetal Heart	heart
3	chr6:150724000-150725400	Enhancers	Adipose Nuclei	Adipose
4	chr6:150724000-150725400	Enhancers	Fetal Lung	lung
5	chr6:150724000-150725400	Enhancers	Fetal Stomach	stomach
6	chr6:150724000-150725600	Enhancers	Osteobl	bone
7	chr6:150724200-150725400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:150724200-150725400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:150724200-150725600	Enhancers	Hela-S3	cervix
10	chr6:150724200-150725600	Enhancers	NH-A	brain
11	chr6:150724400-150724600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:150724400-150724800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150724400-150724800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:150724400-150724800	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:150724400-150724800	Enhancers	Fetal Thymus	thymus
16	chr6:150724400-150724800	Enhancers	Left Ventricle	heart
17	chr6:150724400-150724800	Enhancers	Lung	lung
18	chr6:150724400-150724800	Enhancers	Right Atrium	heart
19	chr6:150724400-150724800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:150724400-150724800	Flanking Active TSS	Stomach Mucosa	stomach
21	chr6:150724400-150725000	Enhancers	Aorta	Aorta
22	chr6:150724400-150725000	Enhancers	HMEC	breast
23	chr6:150724400-150725400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:150724400-150725400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:150724400-150725400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:150724400-150725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:150724400-150725400	Enhancers	Esophagus	oesophagus
28	chr6:150724400-150725400	Enhancers	Fetal Muscle Leg	muscle
29	chr6:150724400-150725400	Enhancers	Right Ventricle	heart
30	chr6:150724400-150725400	Bivalent Enhancer	HUVEC	blood vessel
31	chr6:150724400-150725400	Enhancers	NHEK	skin
32	chr6:150724400-150725600	Enhancers	Fetal Kidney	kidney

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