Variant report
| Variant | rs9372055 |
|---|---|
| Chromosome Location | chr6:150824762-150824763 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150820645..150822727-chr6:150824228..150825998,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs4304173 | 0.89[ASN][1000 genomes] |
| rs4478418 | 0.84[ASN][1000 genomes] |
| rs6903974 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6908890 | 0.91[ASN][1000 genomes] |
| rs6913362 | 0.82[ASN][1000 genomes] |
| rs7745789 | 0.83[ASN][1000 genomes] |
| rs9322262 | 0.83[ASN][1000 genomes] |
| rs9371454 | 0.84[ASN][1000 genomes] |
| rs9372056 | 0.84[ASN][1000 genomes] |
| rs9383828 | 0.84[ASN][1000 genomes] |
| rs9384546 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9384547 | 0.85[ASN][1000 genomes] |
| rs9384551 | 0.86[ASN][1000 genomes] |
| rs9384557 | 0.80[ASN][1000 genomes] |
| rs9397324 | 0.84[ASN][1000 genomes] |
| rs9397330 | 0.86[ASN][1000 genomes] |
| rs9398010 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9480466 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9480468 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020067 | chr6:150730783-150870708 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv886772 | chr6:150743364-151024280 | Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv3367098 | chr6:150823209-150825207 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150824400-150824800 | Enhancers | H9 Cell Line | embryonic stem cell |
