Variant report

Variant	rs9372081
Chromosome Location	chr6:150955105-150955106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150947452..150949419-chr6:150952657..150955576,2	MCF-7	breast:
2	chr6:150951151..150953690-chr6:150954298..150957054,3	K562	blood:
3	chr6:150952990..150955187-chr6:150959095..150960724,2	MCF-7	breast:
4	chr6:150951658..150953857-chr6:150954928..150957054,2	K562	blood:
5	chr6:150954086..150955641-chr6:150957684..150959729,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1388912	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs275343	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs275344	0.97[EUR][1000 genomes]
rs275345	0.98[EUR][1000 genomes]
rs275349	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7769605	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7775858	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9384570	0.97[EUR][1000 genomes]
rs9384571	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:150947600-150957400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150947800-150959400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150949000-150958000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:150951800-150955200	Enhancers	Left Ventricle	heart
6	chr6:150952400-150955400	Enhancers	Fetal Muscle Trunk	muscle
7	chr6:150952400-150955800	Enhancers	Fetal Stomach	stomach
8	chr6:150952600-150956000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:150952800-150955200	Enhancers	Esophagus	oesophagus
10	chr6:150952800-150955200	Enhancers	Fetal Muscle Leg	muscle
11	chr6:150953000-150955200	Enhancers	Fetal Intestine Large	intestine
12	chr6:150953200-150957800	Enhancers	Fetal Kidney	kidney
13	chr6:150953600-150955200	Enhancers	Gastric	stomach
14	chr6:150953600-150956400	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr6:150953800-150955400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:150953800-150956600	Weak transcription	Stomach Mucosa	stomach
17	chr6:150953800-150962200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:150953800-150962400	Weak transcription	Ovary	ovary
19	chr6:150954000-150955200	Flanking Active TSS	Thymus	Thymus
20	chr6:150954000-150955800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:150954000-150955800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:150954000-150961800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:150954200-150955200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:150954200-150956400	Weak transcription	Brain Germinal Matrix	brain
25	chr6:150954400-150955200	Enhancers	Pancreas	Pancrea
26	chr6:150954400-150955200	Flanking Active TSS	GM12878-XiMat	blood
27	chr6:150954400-150957600	Enhancers	Fetal Heart	heart
28	chr6:150954400-150958800	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr6:150954600-150955200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:150954600-150955200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:150954600-150955600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:150954600-150955600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:150954600-150956000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:150954600-150958000	Weak transcription	Brain Substantia Nigra	brain
35	chr6:150954600-150962600	Weak transcription	Adipose Nuclei	Adipose
36	chr6:150954600-150962600	Weak transcription	Brain Anterior Caudate	brain
37	chr6:150954800-150955200	Enhancers	Spleen	Spleen
38	chr6:150954800-150955600	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr6:150954800-150961800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:150955000-150955200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr6:150955000-150955200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:150955000-150955200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr6:150955000-150955600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:150955000-150955600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr6:150955000-150955800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:150955000-150956000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:150955000-150956000	Weak transcription	Fetal Lung	lung
48	chr6:150955000-150956000	Weak transcription	Small Intestine	intestine
49	chr6:150955000-150956200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:150955000-150956200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links