Variant report

Variant	rs937296
Chromosome Location	chr2:182692674-182692675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182681410..182683561-chr2:182690955..182693010,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10183527	0.82[ASN][1000 genomes]
rs10183937	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10190772	0.81[CHB][hapmap]
rs10803953	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11884097	0.82[ASN][1000 genomes]
rs11886921	0.81[ASN][1000 genomes]
rs11895376	0.81[CHB][hapmap]
rs11901603	0.82[ASN][1000 genomes]
rs11902910	0.82[ASN][1000 genomes]
rs12620901	0.88[JPT][hapmap]
rs13414894	0.82[ASN][1000 genomes]
rs13415272	0.82[ASN][1000 genomes]
rs13419200	0.80[MEX][hapmap]
rs13424337	0.82[ASN][1000 genomes]
rs13428496	0.82[ASN][1000 genomes]
rs1343793	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs16867500	0.82[MEX][hapmap]
rs16867502	0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867503	0.87[JPT][hapmap]
rs16867504	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2037799	0.81[ASN][1000 genomes]
rs2368225	0.81[ASN][1000 genomes]
rs4018749	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4508561	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57930770	0.94[ASN][1000 genomes]
rs60384758	0.82[ASN][1000 genomes]
rs6740944	0.94[ASN][1000 genomes]
rs6754481	0.82[ASN][1000 genomes]
rs6758834	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7567220	0.82[ASN][1000 genomes]
rs7567371	0.94[ASN][1000 genomes]
rs9288073	0.82[ASN][1000 genomes]
rs9288074	0.82[ASN][1000 genomes]
rs951542	0.82[ASN][1000 genomes]
rs951543	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv834478	chr2:182654811-182843201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182682200-182695400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:182690600-182695400	Weak transcription	Pancreas	Pancrea

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