Variant report

Variant	rs9377215
Chromosome Location	chr6:101212153-101212154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101209490..101212282-chr6:101220701..101222580,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12183204	1.00[ASN][1000 genomes]
rs1336240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336248	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472299	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1577618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172843	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295604	1.00[ASN][1000 genomes]
rs3736784	1.00[ASN][1000 genomes]
rs3736785	1.00[ASN][1000 genomes]
rs41285887	0.90[ASN][1000 genomes]
rs41285889	1.00[ASN][1000 genomes]
rs41288407	1.00[ASN][1000 genomes]
rs41288409	1.00[ASN][1000 genomes]
rs41288411	1.00[ASN][1000 genomes]
rs41289345	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4839788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840146	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59852351	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61746540	0.90[ASN][1000 genomes]
rs62422696	1.00[ASN][1000 genomes]
rs6899507	1.00[ASN][1000 genomes]
rs6902414	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903429	0.90[ASN][1000 genomes]
rs6908453	1.00[ASN][1000 genomes]
rs6908648	0.83[ASN][1000 genomes]
rs6923187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6925086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927531	0.90[ASN][1000 genomes]
rs6928584	0.91[ASN][1000 genomes]
rs6932921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73506930	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7741877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751872	1.00[ASN][1000 genomes]
rs7756019	1.00[ASN][1000 genomes]
rs7757823	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765469	1.00[ASN][1000 genomes]
rs7767971	1.00[ASN][1000 genomes]
rs7770430	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773317	1.00[ASN][1000 genomes]
rs9322169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390683	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399691	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404051	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9485416	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9485419	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9498396	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498401	0.86[ASN][1000 genomes]
rs9498405	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020692	chr6:101136992-101426071	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv604275	chr6:101158950-101277926	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv886457	chr6:101158950-101487473	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1016353	chr6:101172705-101304041	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1024526	chr6:101192726-101241291	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101182200-101214400	Weak transcription	A549	lung
2	chr6:101184400-101304600	Weak transcription	Hela-S3	cervix
3	chr6:101185400-101212600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:101190600-101212600	Weak transcription	HSMMtube	muscle
5	chr6:101190800-101216200	Weak transcription	Stomach Mucosa	stomach
6	chr6:101190800-101217400	Weak transcription	NHLF	lung
7	chr6:101191400-101212600	Weak transcription	Gastric	stomach
8	chr6:101191400-101213000	Weak transcription	HMEC	breast
9	chr6:101191400-101217600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:101191400-101277000	Weak transcription	Esophagus	oesophagus
11	chr6:101202800-101215400	Weak transcription	Colonic Mucosa	Colon
12	chr6:101204800-101215200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:101205600-101212600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:101205600-101215200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:101206200-101215400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:101206400-101215200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:101206600-101213600	Weak transcription	Fetal Kidney	kidney
18	chr6:101207200-101215200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:101207600-101217000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:101208200-101215200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:101208200-101215400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:101208400-101213800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:101208400-101221400	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:101208600-101213800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr6:101209000-101212400	Strong transcription	K562	blood
26	chr6:101209400-101216600	Weak transcription	Lung	lung
27	chr6:101209600-101214200	Weak transcription	Right Ventricle	heart
28	chr6:101210000-101212600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:101210600-101212800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:101210600-101213600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:101210600-101214600	ZNF genes & repeats	GM12878-XiMat	blood
32	chr6:101210800-101215400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:101211000-101213200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
34	chr6:101211000-101213600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
35	chr6:101211000-101213600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:101211000-101214200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:101211000-101214400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:101211000-101214600	Strong transcription	Fetal Intestine Large	intestine
39	chr6:101211000-101215200	ZNF genes & repeats	Dnd41	blood
40	chr6:101211000-101215400	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:101211000-101215400	Strong transcription	NH-A	brain
42	chr6:101211200-101212200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:101211200-101212200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:101211200-101212200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
45	chr6:101211200-101212800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
46	chr6:101211200-101213200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:101211200-101213200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
48	chr6:101211200-101213400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr6:101211200-101213600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr6:101211200-101213600	Strong transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links