Variant report
| Variant | rs9377318 |
|---|---|
| Chromosome Location | chr6:102326181-102326182 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11156157 | 1.00[YRI][hapmap] |
| rs11962789 | 1.00[YRI][hapmap] |
| rs1555775 | 1.00[YRI][hapmap] |
| rs1965603 | 1.00[YRI][hapmap] |
| rs2518267 | 1.00[YRI][hapmap] |
| rs2518268 | 1.00[YRI][hapmap] |
| rs2764224 | 1.00[YRI][hapmap] |
| rs2764225 | 1.00[YRI][hapmap] |
| rs2791817 | 1.00[YRI][hapmap] |
| rs2791821 | 1.00[YRI][hapmap] |
| rs2852573 | 1.00[YRI][hapmap] |
| rs4120910 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs4501440 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4839803 | 1.00[YRI][hapmap] |
| rs4839804 | 1.00[YRI][hapmap] |
| rs4840197 | 1.00[YRI][hapmap] |
| rs4840198 | 1.00[YRI][hapmap] |
| rs4840199 | 1.00[YRI][hapmap] |
| rs4840200 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6570996 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9322613 | 1.00[YRI][hapmap] |
| rs9377308 | 1.00[YRI][hapmap] |
| rs9377314 | 1.00[YRI][hapmap] |
| rs9386294 | 1.00[YRI][hapmap] |
| rs9390788 | 1.00[YRI][hapmap] |
| rs9404145 | 1.00[YRI][hapmap] |
| rs9404152 | 1.00[YRI][hapmap] |
| rs9404153 | 1.00[YRI][hapmap] |
| rs9485549 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap] |
| rs9485553 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs9498713 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv463994 | chr6:102303080-102346746 | Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv604318 | chr6:102303080-102346746 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv604319 | chr6:102307069-102355867 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv604320 | chr6:102310726-102350747 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv886465 | chr6:102318339-102466397 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
