Variant report

Variant	rs9381494
Chromosome Location	chr6:12913152-12913153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1014342	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12530250	0.86[EUR][1000 genomes]
rs13197912	0.85[EUR][1000 genomes]
rs1332844	0.94[EUR][1000 genomes]
rs1953088	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2327620	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876302	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2876303	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711863	0.81[EUR][1000 genomes]
rs4714955	0.84[EUR][1000 genomes]
rs4714990	0.87[AMR][1000 genomes]
rs62389955	0.84[EUR][1000 genomes]
rs6458545	0.81[AMR][1000 genomes]
rs6911226	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6915761	0.86[ASN][1000 genomes]
rs6915983	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6925904	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7454157	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750679	0.94[EUR][1000 genomes]
rs7751826	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7760016	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760527	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180558	0.80[EUR][1000 genomes]
rs9296512	0.94[EUR][1000 genomes]
rs9369640	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9369650	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9369652	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9395214	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9463278	0.80[ASN][1000 genomes]
rs9472965	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12910400-12913400	Weak transcription	Left Ventricle	heart
2	chr6:12911200-12918000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:12912200-12913400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:12912200-12913400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:12912200-12913800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:12912200-12913800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:12912200-12913800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:12912200-12916000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:12912200-12929800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:12912800-12913800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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