Variant report

Variant	rs9381638
Chromosome Location	chr6:13027968-13027969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13019900..13022140-chr6:13027831..13030315,2	K562	blood:
2	chr6:13026402..13029153-chr6:13041803..13044257,2	MCF-7	breast:
3	chr6:12980989..12983402-chr6:13027140..13029769,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4129937	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4132045	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4236098	0.84[EUR][1000 genomes]
rs4616991	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4715065	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4715068	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4715069	0.81[ASN][1000 genomes]
rs6907651	0.84[ASN][1000 genomes]
rs6912487	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9349439	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9349440	0.84[ASN][1000 genomes]
rs9367308	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9369762	0.84[ASN][1000 genomes]
rs9381635	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9395336	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13015800-13029000	Weak transcription	Pancreas	Pancrea
2	chr6:13020800-13028800	Weak transcription	Left Ventricle	heart
3	chr6:13024600-13030800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:13025600-13031800	Enhancers	Fetal Heart	heart
5	chr6:13026000-13031200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:13026400-13028000	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:13026600-13028000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:13026600-13034600	Weak transcription	Fetal Brain Female	brain
9	chr6:13027000-13028000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:13027000-13029000	Weak transcription	Right Ventricle	heart
11	chr6:13027000-13030200	Weak transcription	NHDF-Ad	bronchial
12	chr6:13027000-13030800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:13027000-13031000	Weak transcription	HSMMtube	muscle
14	chr6:13027000-13032600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:13027200-13028000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:13027200-13037400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:13027400-13029000	Weak transcription	Aorta	Aorta
18	chr6:13027400-13029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:13027600-13028400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:13027600-13033000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:13027600-13038000	Weak transcription	Brain Angular Gyrus	brain
22	chr6:13027800-13028800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:13027800-13029600	Weak transcription	Lung	lung
24	chr6:13027800-13039000	Weak transcription	Brain Anterior Caudate	brain

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