Variant report

Variant	rs9382410
Chromosome Location	chr6:54848142-54848143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12055817	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12175211	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16886188	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35576476	0.90[ASN][1000 genomes]
rs3813847	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4594937	0.90[ASN][1000 genomes]
rs62414963	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62416361	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62416376	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62416415	0.83[EUR][1000 genomes]
rs62416457	0.83[EUR][1000 genomes]
rs62416516	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62416519	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62416520	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62416521	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62416542	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71560884	0.95[ASN][1000 genomes]
rs9349746	0.90[ASN][1000 genomes]
rs9349762	1.00[JPT][hapmap]
rs9357821	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357827	0.90[ASN][1000 genomes]
rs9357828	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9357830	0.85[ASN][1000 genomes]
rs9357833	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9357834	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9357846	1.00[JPT][hapmap]
rs9367598	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9367603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367613	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9370338	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9370339	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9370340	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9370341	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9370349	0.95[ASN][1000 genomes]
rs9370356	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9370365	0.90[ASN][1000 genomes]
rs9370368	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9370372	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9370376	0.83[EUR][1000 genomes]
rs9370397	1.00[JPT][hapmap]
rs9370398	1.00[JPT][hapmap]
rs9382401	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9382412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382413	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382423	0.90[ASN][1000 genomes]
rs9382424	0.90[ASN][1000 genomes]
rs9382425	0.84[ASN][1000 genomes]
rs9382433	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9382435	1.00[AFR][1000 genomes]
rs9382439	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9382451	0.83[EUR][1000 genomes]
rs9382453	0.83[EUR][1000 genomes]
rs9382459	1.00[JPT][hapmap]
rs9382461	1.00[JPT][hapmap]
rs9382462	1.00[JPT][hapmap]
rs9396026	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9396029	0.90[ASN][1000 genomes]
rs9396030	0.90[ASN][1000 genomes]
rs9396037	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9475058	1.00[JPT][hapmap]
rs9637955	0.83[EUR][1000 genomes]
rs980823	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv603134	chr6:54841672-54851340	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv20291	chr6:54846098-54851665	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3474002	chr6:54846245-54851547	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3474003	chr6:54846291-54851530	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3474001	chr6:54846368-54851443	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv514361	chr6:54846369-54848773	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv499725	chr6:54846381-54851446	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3474004	chr6:54846382-54851446	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv603135	chr6:54848142-54849779	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv603136	chr6:54848142-54849908	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv603137	chr6:54848142-54850370	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv603138	chr6:54848142-54850396	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv603139	chr6:54848142-54851038	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv603140	chr6:54848142-54851340	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv603141	chr6:54848142-54852462	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54854800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:54847600-54848200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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