Variant report

Variant	rs9383542
Chromosome Location	chr6:151041352-151041353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11155750	0.92[MEX][hapmap]
rs2035986	0.91[ASN][1000 genomes]
rs2279629	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4449641	0.92[MEX][hapmap]
rs6557084	0.85[TSI][hapmap]
rs6557086	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151026800-151043600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:151029400-151041800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:151033600-151042000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:151033600-151050200	Weak transcription	Lung	lung
5	chr6:151034200-151041800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:151034200-151042000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:151034400-151042000	Weak transcription	Brain Germinal Matrix	brain
8	chr6:151035000-151066400	Weak transcription	Right Ventricle	heart
9	chr6:151035400-151042000	Weak transcription	Right Atrium	heart
10	chr6:151035800-151041400	Weak transcription	Fetal Kidney	kidney
11	chr6:151035800-151042000	Weak transcription	Brain Anterior Caudate	brain
12	chr6:151035800-151042000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:151035800-151042000	Weak transcription	Brain Substantia Nigra	brain
14	chr6:151036200-151041400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:151037800-151042200	Weak transcription	Fetal Intestine Large	intestine
16	chr6:151038200-151042000	Weak transcription	Small Intestine	intestine
17	chr6:151038800-151042200	Weak transcription	Esophagus	oesophagus
18	chr6:151039000-151041800	Weak transcription	Stomach Mucosa	stomach
19	chr6:151039000-151042000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:151039000-151058800	Weak transcription	Gastric	stomach
21	chr6:151039200-151041600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:151039200-151042000	Weak transcription	Placenta	Placenta
23	chr6:151039600-151043800	Weak transcription	Thymus	Thymus
24	chr6:151040000-151041600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:151040000-151055800	Weak transcription	HUVEC	blood vessel
26	chr6:151040200-151041800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:151040200-151041800	Enhancers	HMEC	breast
28	chr6:151040200-151041800	Enhancers	HSMMtube	muscle
29	chr6:151040200-151041800	Enhancers	NH-A	brain
30	chr6:151040200-151042000	Enhancers	Fetal Lung	lung
31	chr6:151040200-151042200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:151040200-151042800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:151040200-151042800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:151040200-151042800	Enhancers	Fetal Thymus	thymus
35	chr6:151040200-151043000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:151040400-151042200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:151040400-151042800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr6:151040600-151041800	Enhancers	GM12878-XiMat	blood
39	chr6:151040600-151042200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:151040600-151042400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:151040600-151042600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:151040600-151042600	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr6:151040800-151042000	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr6:151040800-151042000	Enhancers	Primary B cells from cord blood	blood
45	chr6:151040800-151042000	Enhancers	Fetal Brain Female	brain
46	chr6:151040800-151042800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:151041000-151041600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:151041000-151041800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:151041000-151042000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr6:151041000-151042000	Weak transcription	Brain Angular Gyrus	brain

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