Variant report

Variant	rs9383827
Chromosome Location	chr6:150810650-150810651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11752980	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11754755	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35512316	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4594964	0.81[AMR][1000 genomes]
rs60000576	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67032163	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6904218	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7753910	0.81[AMR][1000 genomes]
rs9372050	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9383825	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9480463	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150808000-150811400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:150808000-150812200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:150808000-150812400	Weak transcription	HUVEC	blood vessel
4	chr6:150808200-150811200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:150808200-150811200	Weak transcription	Fetal Thymus	thymus
6	chr6:150808200-150811400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:150810200-150811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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