Variant report

Variant	rs9383834
Chromosome Location	chr6:150957217-150957218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150956857..150958367-chr6:150960142..150962219,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1492577	0.91[MEX][hapmap]
rs2029644	0.82[MEX][hapmap]
rs6933168	0.80[AMR][1000 genomes]
rs9372082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9383834	MYCT1	cis	parietal	SCAN
rs9383834	CD244	trans	lymphoblastoid	seeQTL
rs9383834	IL7	trans	lymphoblastoid	seeQTL
rs9383834	IL10RB	trans	lymphoblastoid	seeQTL
rs9383834	FAIM3	trans	lymphoblastoid	seeQTL
rs9383834	HEY1	trans	lymphoblastoid	seeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:150947600-150957400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150947800-150959400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150949000-150958000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:150953200-150957800	Enhancers	Fetal Kidney	kidney
6	chr6:150953800-150962200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:150953800-150962400	Weak transcription	Ovary	ovary
8	chr6:150954000-150961800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:150954400-150957600	Enhancers	Fetal Heart	heart
10	chr6:150954400-150958800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr6:150954600-150958000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:150954600-150962600	Weak transcription	Adipose Nuclei	Adipose
13	chr6:150954600-150962600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:150954800-150961800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:150955000-150960800	Weak transcription	Lung	lung
16	chr6:150955000-150962400	Weak transcription	Right Atrium	heart
17	chr6:150955200-150957400	Weak transcription	Left Ventricle	heart
18	chr6:150955200-150958600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:150955200-150959400	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:150955200-150959400	Weak transcription	Gastric	stomach
21	chr6:150955200-150961000	Weak transcription	Spleen	Spleen
22	chr6:150955200-150963400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:150955400-150957600	Flanking Active TSS	GM12878-XiMat	blood
24	chr6:150955600-150957400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:150955600-150963600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:150955800-150972400	Weak transcription	Fetal Stomach	stomach
27	chr6:150956000-150961400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:150956200-150958200	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:150956200-150958200	Enhancers	Fetal Intestine Large	intestine
30	chr6:150956200-150958200	Enhancers	Fetal Intestine Small	intestine
31	chr6:150956400-150957400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:150956400-150957400	Weak transcription	Fetal Thymus	thymus
33	chr6:150956400-150957400	Weak transcription	Thymus	Thymus
34	chr6:150956400-150957800	Enhancers	Liver	Liver
35	chr6:150956400-150959400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:150956400-150961800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:150956400-150962000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:150956400-150962600	Weak transcription	HMEC	breast
39	chr6:150956600-150957800	Enhancers	Small Intestine	intestine
40	chr6:150956600-150957800	Enhancers	Stomach Mucosa	stomach
41	chr6:150956600-150961600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:150956800-150959400	Enhancers	Primary B cells from peripheral blood	blood
43	chr6:150956800-150961800	Weak transcription	Fetal Lung	lung
44	chr6:150956800-150962400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:150957000-150957400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:150957000-150957600	Enhancers	HUVEC	blood vessel

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