Variant report

Variant	rs9384191
Chromosome Location	chr6:150477735-150477736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17079361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384196	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150473600-150479200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150474200-150485800	Weak transcription	Left Ventricle	heart
3	chr6:150474200-150493600	Weak transcription	Right Ventricle	heart
4	chr6:150474400-150482000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150474800-150478400	Weak transcription	Primary T cells from cord blood	blood
6	chr6:150474800-150478600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:150475000-150478600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:150475400-150479200	Enhancers	HMEC	breast
9	chr6:150475600-150479200	Enhancers	K562	blood
10	chr6:150475800-150477800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:150476000-150477800	Enhancers	NHEK	skin
12	chr6:150476000-150478000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150476000-150490600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:150476200-150478000	Weak transcription	Stomach Mucosa	stomach
15	chr6:150476800-150477800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:150476800-150478600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:150477600-150478400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:150477600-150482600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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