Variant report

Variant	rs9384212
Chromosome Location	chr6:150497307-150497308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150494832..150497626-chr6:150501438..150503666,2	K562	blood:
2	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11155709	0.92[AFR][1000 genomes]
rs11155710	0.82[AFR][1000 genomes]
rs11751046	0.82[AFR][1000 genomes]
rs11759065	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322250	0.84[ASN][1000 genomes]
rs9397194	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9397725	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150486200-150497400	Weak transcription	Right Atrium	heart
2	chr6:150488200-150497800	Weak transcription	Colonic Mucosa	Colon
3	chr6:150491400-150497600	Weak transcription	K562	blood
4	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150491600-150501400	Weak transcription	HMEC	breast
6	chr6:150494400-150501000	Weak transcription	Fetal Brain Female	brain
7	chr6:150496200-150498200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:150496200-150498200	Enhancers	Small Intestine	intestine
9	chr6:150496200-150499600	Enhancers	Fetal Intestine Large	intestine
10	chr6:150496200-150499600	Enhancers	Fetal Intestine Small	intestine
11	chr6:150496200-150499600	Enhancers	Right Ventricle	heart
12	chr6:150496200-150499600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:150496200-150499600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:150496400-150499600	Enhancers	Fetal Muscle Leg	muscle
15	chr6:150496600-150497400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150496800-150497800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:150496800-150498200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:150496800-150498200	Enhancers	Stomach Mucosa	stomach
19	chr6:150496800-150499400	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:150496800-150499600	Enhancers	Psoas Muscle	Psoas
21	chr6:150497000-150502000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:150497200-150497400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:150497200-150497600	Enhancers	Fetal Heart	heart
24	chr6:150497200-150497600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr6:150497200-150497800	Enhancers	NHEK	skin
26	chr6:150497200-150498400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:150497200-150498600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:150497200-150498800	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:150497200-150499400	Enhancers	Esophagus	oesophagus
30	chr6:150497200-150499400	Enhancers	Lung	lung
31	chr6:150497200-150499600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:150497200-150499600	Enhancers	Pancreas	Pancrea
33	chr6:150497200-150499600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr6:150497200-150499800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:150497200-150502400	Enhancers	Left Ventricle	heart

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