Variant report

Variant	rs9384388
Chromosome Location	chr6:150644476-150644477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150637450..150641855-chr6:150642003..150645154,6	K562	blood:
2	chr6:150642041..150644950-chr6:150645013..150647968,3	K562	blood:
3	chr6:150586437..150588677-chr6:150642579..150644863,2	K562	blood:
4	chr6:150514785..150516493-chr6:150643803..150645499,2	K562	blood:
5	chr6:150500428..150502661-chr6:150644242..150645820,2	K562	blood:
6	chr6:150642390..150644728-chr6:150645013..150646951,2	K562	blood:
7	chr6:150638163..150639671-chr6:150643884..150646332,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000201628	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11969964	0.85[MEX][hapmap]
rs1538483	0.87[EUR][1000 genomes]
rs1890521	0.94[ASN][1000 genomes]
rs1890522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478415	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58500904	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59893671	0.93[AFR][1000 genomes]
rs62434564	0.81[ASN][1000 genomes]
rs62441215	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62441216	0.86[AMR][1000 genomes]
rs9384384	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs9384387	0.86[YRI][hapmap];0.95[AFR][1000 genomes]
rs9384474	1.00[CEU][hapmap]
rs9397292	0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5538	chr6:150640370-150652751	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3514391	chr6:150642309-150649007	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3514392	chr6:150642709-150648907	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3514394	chr6:150642716-150648318	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3473571	chr6:150643300-150647937	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3514389	chr6:150643328-150647919	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3514395	chr6:150643343-150647878	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3473572	chr6:150643351-150647922	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3473569	chr6:150643370-150647881	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3514393	chr6:150643373-150647885	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3514390	chr6:150643420-150647946	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3473570	chr6:150643421-150647846	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3514398	chr6:150643431-150647844	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv499767	chr6:150643434-150647842	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3473573	chr6:150643435-150647842	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3514399	chr6:150643435-150647842	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv20352	chr6:150643454-150647802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv514396	chr6:150643715-150646403	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv2761044	chr6:150644384-150647013	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150641200-150645000	Enhancers	K562	blood
2	chr6:150642000-150646200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:150642000-150648200	Weak transcription	Aorta	Aorta
4	chr6:150642000-150648400	Weak transcription	Right Ventricle	heart
5	chr6:150642600-150646400	Enhancers	Fetal Muscle Leg	muscle
6	chr6:150642600-150647400	Enhancers	Psoas Muscle	Psoas
7	chr6:150642800-150644800	Enhancers	Placenta	Placenta
8	chr6:150642800-150646600	Enhancers	Adipose Nuclei	Adipose
9	chr6:150643200-150644800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:150643200-150646200	Enhancers	Lung	lung
11	chr6:150643400-150644600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr6:150643600-150645800	Weak transcription	Spleen	Spleen
13	chr6:150643600-150646800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:150643800-150648400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:150644000-150644600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr6:150644200-150646400	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:150644200-150646800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:150644400-150644800	Enhancers	Left Ventricle	heart

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