Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1492574	0.80[ASN][1000 genomes]
rs4304173	0.94[ASN][1000 genomes]
rs4478418	0.89[ASN][1000 genomes]
rs6903974	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6908890	0.87[ASN][1000 genomes]
rs6913362	0.80[ASN][1000 genomes]
rs7745789	0.88[ASN][1000 genomes]
rs7764084	0.83[ASN][1000 genomes]
rs9322262	0.81[ASN][1000 genomes]
rs9371454	0.82[ASN][1000 genomes]
rs9371461	0.81[ASN][1000 genomes]
rs9372055	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9372056	0.82[ASN][1000 genomes]
rs9383828	0.82[ASN][1000 genomes]
rs9384547	0.84[ASN][1000 genomes]
rs9384551	0.91[ASN][1000 genomes]
rs9384557	0.85[ASN][1000 genomes]
rs9397324	0.82[ASN][1000 genomes]
rs9397330	0.91[ASN][1000 genomes]
rs9398010	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480466	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9480468	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150825000-150830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: