Variant report

Variant	rs9384557
Chromosome Location	chr6:150857372-150857373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1492574	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4304173	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4478418	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6557543	0.81[ASN][1000 genomes]
rs6908890	0.88[JPT][hapmap]
rs7341223	0.81[ASN][1000 genomes]
rs7341280	0.81[ASN][1000 genomes]
rs7745789	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7756438	0.81[ASN][1000 genomes]
rs7764084	0.87[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9371461	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9372055	0.80[ASN][1000 genomes]
rs9372072	0.84[ASN][1000 genomes]
rs9384546	0.85[ASN][1000 genomes]
rs9384551	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9384556	0.81[ASN][1000 genomes]
rs9397330	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9398017	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150850400-150858000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:150850600-150858200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:150854200-150858200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:150856000-150857600	Enhancers	HepG2	liver
5	chr6:150856000-150858000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:150856200-150857600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:150856200-150858000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:150856400-150857600	Enhancers	Liver	Liver
9	chr6:150856600-150858000	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:150857000-150862400	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links