Variant report

Variant	rs9386284
Chromosome Location	chr6:102009047-102009048
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2518251	0.81[JPT][hapmap]
rs2518262	0.81[JPT][hapmap]
rs7754376	0.88[CEU][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs9285546	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9373614	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9386283	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9390755	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9390756	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9404115	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9404119	0.81[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9386284	NTSR2	trans	brain	seeQTL
rs9386284	POPDC3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102006200-102010600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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