Variant report

Variant	rs9390469
Chromosome Location	chr6:101020829-101020830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101020351..101022880-chr6:101024061..101026252,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10080234	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17060721	0.92[ASN][1000 genomes]
rs2062633	0.92[ASN][1000 genomes]
rs7766621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9485222	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9497757	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9497778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9497851	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv463986	chr6:100995048-101084946	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv604264	chr6:100995048-101084946	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886446	chr6:101018032-101084946	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886447	chr6:101018032-101091434	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100960800-101035000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:100965600-101033600	Weak transcription	Ovary	ovary
3	chr6:100988200-101035000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:100988200-101035000	Weak transcription	GM12878-XiMat	blood
5	chr6:100988800-101034200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:101001000-101034000	Weak transcription	Fetal Intestine Large	intestine
7	chr6:101001600-101034000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:101002000-101033600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:101002400-101027200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:101005000-101023400	Weak transcription	Placenta	Placenta
11	chr6:101005200-101033600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:101006200-101035400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:101007400-101033600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:101008800-101033600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:101009000-101033600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:101009000-101034600	Weak transcription	NH-A	brain
17	chr6:101009000-101035000	Weak transcription	NHDF-Ad	bronchial
18	chr6:101009000-101035200	Weak transcription	Osteobl	bone
19	chr6:101009000-101065600	Weak transcription	NHEK	skin
20	chr6:101010000-101027600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:101011000-101080800	Weak transcription	HepG2	liver
22	chr6:101011400-101027200	Weak transcription	Psoas Muscle	Psoas
23	chr6:101011400-101035000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:101011600-101034200	Weak transcription	Pancreas	Pancrea
25	chr6:101012800-101033800	Weak transcription	Adipose Nuclei	Adipose
26	chr6:101014000-101027400	Weak transcription	Fetal Kidney	kidney
27	chr6:101014200-101027200	Weak transcription	Liver	Liver
28	chr6:101014200-101027800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:101014400-101022400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:101014800-101024400	Weak transcription	Fetal Stomach	stomach
31	chr6:101014800-101033600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:101015800-101049200	Weak transcription	Esophagus	oesophagus
33	chr6:101016200-101026200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:101016400-101065800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:101017200-101021400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:101017200-101069400	Weak transcription	Fetal Lung	lung
37	chr6:101017600-101034800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:101017800-101021200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:101017800-101024800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:101017800-101035400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr6:101017800-101069800	Weak transcription	Lung	lung
42	chr6:101018400-101051200	Weak transcription	Right Ventricle	heart
43	chr6:101018600-101033800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:101018600-101034800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:101018600-101038400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:101018600-101040800	Weak transcription	HSMMtube	muscle
47	chr6:101018800-101021200	Weak transcription	Brain Anterior Caudate	brain
48	chr6:101018800-101021400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:101019000-101047800	Weak transcription	Small Intestine	intestine
50	chr6:101019200-101021000	Weak transcription	Fetal Muscle Trunk	muscle

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