Variant report

Variant	rs9390779
Chromosome Location	chr6:102209081-102209082
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10485276	0.84[JPT][hapmap]
rs1325060	0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1340266	0.81[CHB][hapmap]
rs1361444	0.81[CHB][hapmap]
rs1361445	0.81[CHB][hapmap]
rs1361446	0.81[CHB][hapmap]
rs1408768	0.81[CHB][hapmap]
rs1556993	0.81[CHB][hapmap]
rs2246394	0.84[CHB][hapmap]
rs2399636	0.81[CHB][hapmap]
rs2518193	0.81[CHB][hapmap]
rs2518198	0.81[CHB][hapmap]
rs2518200	0.81[CHB][hapmap]
rs2518201	0.81[CHB][hapmap]
rs2518202	0.81[CHB][hapmap]
rs2518203	0.81[CHB][hapmap]
rs2518266	0.81[CHB][hapmap]
rs2764218	0.81[CHB][hapmap]
rs2764220	0.81[CHB][hapmap]
rs2764228	0.81[CHB][hapmap]
rs2764230	0.81[CHB][hapmap]
rs2764233	0.81[CHB][hapmap]
rs2764236	0.81[CHB][hapmap]
rs2791812	0.81[CHB][hapmap]
rs2791819	0.81[CHB][hapmap]
rs2791823	0.81[CHB][hapmap]
rs2791827	0.81[CHB][hapmap]
rs2791832	0.81[CHB][hapmap]
rs2791837	0.81[CHB][hapmap]
rs2852574	0.81[CHB][hapmap]
rs4840195	0.81[CHB][hapmap]
rs4840196	0.81[CHB][hapmap]
rs6922753	0.81[CHB][hapmap]
rs6932088	0.81[EUR][1000 genomes]
rs9322611	0.81[CHB][hapmap]
rs9377306	0.81[CHB][hapmap]
rs9399728	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs9399732	0.81[CHB][hapmap]
rs9399733	0.86[CEU][hapmap]
rs9404141	0.81[EUR][1000 genomes]
rs9404148	0.81[CHB][hapmap]
rs9498691	0.80[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9498701	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3438178	chr6:102207284-102209832	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3405587	chr6:102207384-102209557	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3421011	chr6:102207459-102209307	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102207400-102210800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:102207400-102217800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:102207600-102210800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:102207600-102212200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:102207600-102212800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:102208600-102211800	Enhancers	Liver	Liver
7	chr6:102208800-102209200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:102208800-102209200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:102208800-102209200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:102208800-102209200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:102208800-102209200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:102208800-102209200	Enhancers	Adipose Nuclei	Adipose
13	chr6:102208800-102209200	Enhancers	NHLF	lung
14	chr6:102208800-102209200	Enhancers	Osteobl	bone
15	chr6:102208800-102209400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:102208800-102209400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:102208800-102209400	Enhancers	Fetal Heart	heart
18	chr6:102208800-102209400	Enhancers	HMEC	breast
19	chr6:102208800-102209400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr6:102208800-102209600	Enhancers	Hela-S3	cervix
21	chr6:102208800-102209800	Enhancers	NHEK	skin
22	chr6:102208800-102211000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:102209000-102209200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:102209000-102209200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:102209000-102209200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:102209000-102209200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:102209000-102209200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:102209000-102209400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:102209000-102209400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:102209000-102209600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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