Variant report

Variant	rs9390785
Chromosome Location	chr6:102255649-102255650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10485276	0.90[ASN][1000 genomes]
rs11156157	0.95[ASN][1000 genomes]
rs11962789	0.91[ASN][1000 genomes]
rs1340266	0.89[ASN][1000 genomes]
rs1361444	0.89[ASN][1000 genomes]
rs1408767	0.98[ASN][1000 genomes]
rs1408768	0.86[ASN][1000 genomes]
rs17062480	0.90[ASN][1000 genomes]
rs2038842	0.89[ASN][1000 genomes]
rs2039853	0.89[ASN][1000 genomes]
rs2147714	0.89[ASN][1000 genomes]
rs2399636	0.83[ASN][1000 genomes]
rs2518191	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2518193	0.88[ASN][1000 genomes]
rs2518206	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518267	0.98[ASN][1000 genomes]
rs2518268	0.98[ASN][1000 genomes]
rs2764218	0.89[ASN][1000 genomes]
rs2764220	0.89[ASN][1000 genomes]
rs2764224	0.84[ASN][1000 genomes]
rs2764225	0.98[ASN][1000 genomes]
rs2764228	0.88[ASN][1000 genomes]
rs2764229	0.89[ASN][1000 genomes]
rs2791826	0.82[ASN][1000 genomes]
rs2791827	0.82[ASN][1000 genomes]
rs2791832	0.82[ASN][1000 genomes]
rs2791834	0.82[ASN][1000 genomes]
rs4839802	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840195	0.88[ASN][1000 genomes]
rs4840196	0.88[ASN][1000 genomes]
rs4840197	0.97[ASN][1000 genomes]
rs7749469	0.81[ASN][1000 genomes]
rs7754022	0.84[ASN][1000 genomes]
rs7775085	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7775876	0.81[ASN][1000 genomes]
rs9322609	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9377306	0.87[ASN][1000 genomes]
rs9377307	0.88[ASN][1000 genomes]
rs9377308	1.00[ASN][1000 genomes]
rs9386291	0.81[ASN][1000 genomes]
rs9386293	0.84[ASN][1000 genomes]
rs9386294	0.91[ASN][1000 genomes]
rs9390784	0.97[ASN][1000 genomes]
rs9390788	0.91[ASN][1000 genomes]
rs9399732	0.86[ASN][1000 genomes]
rs9399733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9404143	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9404145	0.90[ASN][1000 genomes]
rs9404148	0.91[ASN][1000 genomes]
rs9485542	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9498693	0.81[ASN][1000 genomes]
rs9498694	0.84[ASN][1000 genomes]
rs9498695	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9498696	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9498697	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9498698	0.90[ASN][1000 genomes]
rs9498701	0.84[ASN][1000 genomes]
rs9498702	0.84[ASN][1000 genomes]
rs9498703	0.91[ASN][1000 genomes]
rs9498713	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1825149	chr6:102249515-102279200	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv933199	chr6:102249974-102266088	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv933514	chr6:102250150-102266088	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv970695	chr6:102252711-102258322	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102253600-102256000	Enhancers	HMEC	breast
2	chr6:102253600-102256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:102253600-102256200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:102254200-102255800	Enhancers	NH-A	brain
5	chr6:102254800-102255800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:102255200-102256200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:102255200-102256200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:102255400-102255800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:102255600-102256200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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