Variant report

Variant	rs9394520
Chromosome Location	chr6:12083440-12083441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12082609..12085210-chr6:12112679..12114634,2	K562	blood:
2	chr6:12057334..12060116-chr6:12082011..12083823,2	K562	blood:
3	chr6:12057334..12059978-chr6:12080782..12083511,2	K562	blood:
4	chr6:12082403..12085689-chr6:12087080..12089060,3	K562	blood:
5	chr6:12078164..12081680-chr6:12081871..12086825,6	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10498679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12176308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872277	0.82[CHB][hapmap]
rs3734271	0.88[CEU][hapmap]
rs3777754	0.88[CEU][hapmap]
rs3777758	0.88[CEU][hapmap]
rs3777762	0.88[CEU][hapmap]
rs3777769	0.88[CEU][hapmap]
rs3777773	0.88[CEU][hapmap]
rs3822926	0.88[CEU][hapmap]
rs4467769	1.00[CHB][hapmap]
rs55943468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56176088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916455	0.85[CEU][hapmap]
rs6928420	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6940075	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs7751398	0.88[CEU][hapmap]
rs9296253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296262	0.88[CEU][hapmap]
rs9349095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357278	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs9366970	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9366972	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9369070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9369072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9369074	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs9380764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9394517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9394526	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs9394541	0.88[CEU][hapmap]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12061600-12084000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:12061600-12085400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:12061600-12105200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:12061600-12109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:12061800-12083600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:12065200-12095000	Weak transcription	NHDF-Ad	bronchial
7	chr6:12066400-12083600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:12066400-12083600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:12066400-12083600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:12066400-12085000	Weak transcription	Gastric	stomach
11	chr6:12066400-12085200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:12066400-12093000	Weak transcription	Fetal Thymus	thymus
13	chr6:12066400-12103600	Weak transcription	Pancreas	Pancrea
14	chr6:12066400-12107600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:12066600-12084000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:12066800-12083600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:12066800-12083600	Weak transcription	HSMMtube	muscle
18	chr6:12066800-12085400	Weak transcription	Right Ventricle	heart
19	chr6:12066800-12109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:12067000-12083600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:12068600-12090600	Weak transcription	Right Atrium	heart
22	chr6:12069600-12095200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:12070000-12090600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:12071600-12091800	Weak transcription	Esophagus	oesophagus
26	chr6:12071600-12093000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:12071800-12083600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:12071800-12083600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:12071800-12094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:12071800-12095400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:12071800-12098000	Weak transcription	NH-A	brain
32	chr6:12071800-12120400	Weak transcription	HepG2	liver
33	chr6:12072000-12083600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:12072000-12093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:12072200-12092400	Weak transcription	Thymus	Thymus
36	chr6:12072800-12089600	Weak transcription	HUVEC	blood vessel
37	chr6:12075400-12085400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:12075600-12085200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:12075600-12085400	Weak transcription	Left Ventricle	heart
40	chr6:12075600-12088600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:12075800-12093400	Weak transcription	Colonic Mucosa	Colon
42	chr6:12077800-12083800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:12077800-12088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:12077800-12098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:12077800-12113400	Weak transcription	HMEC	breast
46	chr6:12078000-12109800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr6:12078400-12085000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:12078400-12089800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:12078600-12083800	Weak transcription	Osteobl	bone
50	chr6:12078600-12092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links