Variant report

Variant	rs9395992
Chromosome Location	chr6:54651170-54651171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr6:54651061-54651242	HepG2	liver:	n/a	n/a
2	MAFK	chr6:54651090-54651243	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RNU6-1023P	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1503137	1.00[CHB][hapmap]
rs1503150	1.00[CHB][hapmap]
rs16886072	1.00[CHB][hapmap]
rs16886073	1.00[CHB][hapmap]
rs16886088	1.00[CHB][hapmap]
rs16886105	1.00[CHB][hapmap]
rs1910352	1.00[CHB][hapmap]
rs239787	1.00[CHB][hapmap]
rs239788	1.00[CHB][hapmap]
rs239789	1.00[CHB][hapmap]
rs239791	1.00[CHB][hapmap]
rs239793	1.00[CHB][hapmap]
rs239798	1.00[CHB][hapmap]
rs239802	1.00[CHB][hapmap]
rs239805	1.00[CHB][hapmap]
rs239823	1.00[CHB][hapmap]
rs239824	1.00[CHB][hapmap]
rs239828	1.00[CHB][hapmap]
rs239829	1.00[CHB][hapmap]
rs239830	1.00[CHB][hapmap]
rs239831	1.00[CHB][hapmap]
rs239832	1.00[CHB][hapmap]
rs239833	1.00[CHB][hapmap]
rs239834	1.00[CHB][hapmap]
rs239836	1.00[CHB][hapmap]
rs239838	1.00[CHB][hapmap]
rs239839	1.00[CHB][hapmap]
rs239840	1.00[CHB][hapmap]
rs239841	1.00[CHB][hapmap]
rs239843	1.00[CHB][hapmap]
rs239846	1.00[CHB][hapmap]
rs239847	1.00[CHB][hapmap]
rs239848	1.00[CHB][hapmap]
rs239852	1.00[CHB][hapmap]
rs239853	1.00[CHB][hapmap]
rs2746440	1.00[CHB][hapmap]
rs398483	1.00[CHB][hapmap]
rs406149	1.00[CHB][hapmap]
rs41431945	1.00[CHB][hapmap]
rs57567824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58082927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58880219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59257883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6913275	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7453441	1.00[CHB][hapmap]
rs7739951	1.00[CHB][hapmap]
rs7743188	1.00[CHB][hapmap]
rs7773204	1.00[CHB][hapmap]
rs9349730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9349735	1.00[CHB][hapmap]
rs9357817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357818	1.00[EUR][1000 genomes]
rs9367588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367596	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9370329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370335	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9382374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382377	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382388	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs9382393	0.83[AMR][1000 genomes]
rs9382394	0.83[AMR][1000 genomes]
rs9382395	0.83[AMR][1000 genomes]
rs9395993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396001	1.00[AMR][1000 genomes]
rs9475077	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54649000-54652800	Weak transcription	Fetal Lung	lung
2	chr6:54650600-54651400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:54650800-54651200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:54651000-54651400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:54651000-54651400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links